| Protein: | RAD9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1309 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1309] | [1..1309] |
|
|
8.0E-45 | [998..1132] | [539..661] |
|
|
1.0E-44 | [998..1132] | [539..661] |
|
|
0.002 | [458..645] | [48..241] |
|
Region A: Residues: [1-991] |
1 11 21 31 41 51
| | | | | |
1 MSGQLVQWKS SPDRVTQSAI KEALHSPLAD GDMNEMNVPV DPLENKVNST NIIEGSPKAN 60
61 PNPVKFMNTS EIFQKSLGLL DESPRHDDEL NIEVGDNDRP NANILHNERT PDLDRIANFF 120
121 KSNRTPGKEN LLTKYQSSDL EDTPLMLRKK MTFQTPTDPL EQKTFKKLKS DTGFCYYGEQ 180
181 NDGEENASLE VTEADATFVQ MAERSADNYD CALEGIVTPK RYKDELSKSG GMQDERVQKT 240
241 QIMISAESPN SISSYDKNKI TGNGRTTRNV NKVFNNNEDN IGAIEEKNPV KKKSENYSSD 300
301 DLRERNNQII QSNESEEINE LEKNLNVSGR ENDVNNLDID INSAVSGTPS RNNAEEEMYS 360
361 SESVNNREPS KKWIFRYSKD KTENNSNRST QIVNNPRTQE MPLDSISIDT QPLSKSFNTE 420
421 TNNELETQII VSSLSQGISA QKGPVFHSTG QTEEIKTQII NSPEQNALNA TFETPVTLSR 480
481 INFEPILEVP ETSSPSKNTM SKPSNSSPIP KEKDTFNIHE REVETNNVFS NDIQNSSNAA 540
541 TRDDIIIAGS SDFNEQKEIT DRIYLQLSGK QISDSGSDET ERMSPNELDT KKESTIMSEV 600
601 ELTQELPEVE EQQDLQTSPK KLVVEEETLM EIKKSKGNSL QLHDDNKECN SDKQDGTESL 660
661 DVALIEHESK GQSSELQKNL MQLFPSESQE IIQNRRTIKR RQKDTIEIGE EEENRSTKTS 720
721 PTKHLKRNSD LDAASIKREP SCSITIQTGE TGSGKDSKEQ SYVFPEGIRT ADNSFLSKDD 780
781 IIFGNAVWCQ YTWNYKFYPG ILLEVDTNQD GCWIYFETGR SLTKDEDIYY LDIRIGDAVT 840
841 FDGNEYVVVG LECRSHDLNI IRCIRGYDTV HLKKKNASGL LGKRTLIKAL SSISLDLSEW 900
901 AKRAKIILED NEKNKGDAYR YLRHPIRGRK SMTNVLSPKK HTDDEKDINT HTEVYNNEIE 960
961 SSSEKKEIVK KDSRDALAEH AGAPSLLFSS G
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [992-1135] |
1 11 21 31 41 51
| | | | | |
1 EIRTGNVFDK CIFVLTSLFE NREELRQTIE SQGGTVIESG FSTLFNFTHP LAKSLVNKGN 60
61 TDNIRELALK LAWKPHSLFA DCRFACLITK RHLRSLKYLE TLALGWPTLH WKFISACIEK 120
121 KRIVPHLIYQ YLLPSGESFR LSLD
|
| Detection Method: | |
| Confidence: | 11.031517 |
| Match: | PF00533 |
| Description: | BRCA1 C Terminus (BRCT) domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1136-1309] |
1 11 21 31 41 51
| | | | | |
1 SPSKGGIIKS NNIFSFYTQF LRGSNLRDQI CGVKKMLNDY IVIVWGRSEL DSFVKFAFAC 60
61 LSAGRMLTID LPNIDVDDTE PLLNALDSLV PRIGSELSNR KLKFLIYANE NNGKSQMKLL 120
121 ERLRSQISLK FKKFNYIFHT ESKEWLIQTI INEDTGFHDD ITDNDIYNTI SEVR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [366-505] |
1 11 21 31 41 51
| | | | | |
1 NREPSKKWIF RYSKDKTENN SNRSTQIVNN PRTQEMPLDS ISIDTQPLSK SFNTETNNEL 60
61 ETQIIVSSLS QGISAQKGPV FHSTGQTEEI KTQIINSPEQ NALNATFETP VTLSRINFEP 120
121 ILEVPETSSP SKNTMSKPSN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [506-761] |
1 11 21 31 41 51
| | | | | |
1 SSPIPKEKDT FNIHEREVET NNVFSNDIQN SSNAATRDDI IIAGSSDFNE QKEITDRIYL 60
61 QLSGKQISDS GSDETERMSP NELDTKKEST IMSEVELTQE LPEVEEQQDL QTSPKKLVVE 120
121 EETLMEIKKS KGNSLQLHDD NKECNSDKQD GTESLDVALI EHESKGQSSE LQKNLMQLFP 180
181 SESQEIIQNR RTIKRRQKDT IEIGEEEENR STKTSPTKHL KRNSDLDAAS IKREPSCSIT 240
241 IQTGETGSGK DSKEQS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [762-911] |
1 11 21 31 41 51
| | | | | |
1 YVFPEGIRTA DNSFLSKDDI IFGNAVWCQY TWNYKFYPGI LLEVDTNQDG CWIYFETGRS 60
61 LTKDEDIYYL DIRIGDAVTF DGNEYVVVGL ECRSHDLNII RCIRGYDTVH LKKKNASGLL 120
121 GKRTLIKALS SISLDLSEWA KRAKIILEDN
|
| Detection Method: | |
| Confidence: | 82.69897 |
| Match: | PF08605.1 |
| Description: | No description for PF08605.1 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [912-988] |
1 11 21 31 41 51
| | | | | |
1 EKNKGDAYRY LRHPIRGRKS MTNVLSPKKH TDDEKDINTH TEVYNNEIES SSEKKEIVKK 60
61 DSRDALAEHA GAPSLLF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [989-1309] |
1 11 21 31 41 51
| | | | | |
1 SSGEIRTGNV FDKCIFVLTS LFENREELRQ TIESQGGTVI ESGFSTLFNF THPLAKSLVN 60
61 KGNTDNIREL ALKLAWKPHS LFADCRFACL ITKRHLRSLK YLETLALGWP TLHWKFISAC 120
121 IEKKRIVPHL IYQYLLPSGE SFRLSLDSPS KGGIIKSNNI FSFYTQFLRG SNLRDQICGV 180
181 KKMLNDYIVI VWGRSELDSF VKFAFACLSA GRMLTIDLPN IDVDDTEPLL NALDSLVPRI 240
241 GSELSNRKLK FLIYANENNG KSQMKLLERL RSQISLKFKK FNYIFHTESK EWLIQTIINE 300
301 DTGFHDDITD NDIYNTISEV R
|
| Detection Method: | |
| Confidence: | 2.44 |
| Match: | 1kzyC |
| Description: | 53BP1 |
Matching Structure (courtesy of the PDB): |
|
