| Protein: | UPC2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 913 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPC2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..913] | [1..913] |
|
|
6.0E-63 | [605..760] | [102..244] |
|
|
1.0E-53 | [8..268] | [7..275] |
|
|
2.0E-50 | [8..268] | [7..276] |
|
|
4.0E-50 | [38..331] | [11..334] |
|
Region A: Residues: [1-166] |
1 11 21 31 41 51
| | | | | |
1 MSEVGIQNHK KAVTKPRRRE KVIELIEVDG KKVSTTSTGK RKFHNKSKNG CDNCKRRRVK 60
61 CDEGKPACRK CTNMKLECQY TPIHLRKGRG ATVVKYVTRK ADGSVESDSS VDLPPTIKKE 120
121 QTPFNDIQSA VKASGSSNDS FPSSASTTKS ESEEKSSAPI EDKNNM
|
| Detection Method: |  |
| Confidence: | 46.502279 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.226078362275538 | bayes_pls_golite062009 |
|
Region A: Residues: [167-645] |
1 11 21 31 41 51
| | | | | |
1 TPLSMGLQGT INKKDMMNNF FSQNGTIGFG SPERLNSGID GLLLPPLPSG NMGAFQLQQQ 60
61 QQVQQQSQPQ TQAQQASGTP NERYGSFDLA GSPALQSTGM SLSNSLSGML LCNRIPSGQN 120
121 YTQQQLQYQL HQQLQLQQHQ QVQLQQYQQL RQEQHQQVQQ QQQEQLQQYQ QHFLQQQQQV 180
181 LLQQEQQPND EEGGVQEENS KKVKEGPLQS QTSETTLNSD AATLQADALS QLSKMGLSLK 240
241 SLSTFPTAGI GGVSYDFQEL LGIKFPINNG NSRATKASNA EEALANMQEH HERAAASVKE 300
301 NDGQLSDTKS PAPSNNAQGG SASIMEPQAA DAVSTMAPIS MIERNMNRNS NISPSTPSAV 360
361 LNDRQEMQDS ISSLGNLTKA ALENNEPTIS LQTSQTENED DASRQDMTSK INNEADRSSV 420
421 SAGTSNIAKL LDLSTKGNLN LIDMKLFHHY CTKVWPTITA AKVSGPEIWR DYIPELAFD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [646-794] |
1 11 21 31 41 51
| | | | | |
1 YPFLMHALLA FSATHLSRTE TGLEQYVSSH RLDALRLLRE AVLEISENNT DALVASALIL 60
61 IMDSLANASG NGTVGNQSLN SMSPSAWIFH VKGAATILTA VWPLSERSKF HNIISVDLSD 120
121 LGDVINPDVG TITELVCFDE SIADLYPVG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [795-913] |
1 11 21 31 41 51
| | | | | |
1 LDSPYLITLA YLDKLHREKN QGDFILRVFT FPALLDKTFL ALLMTGDLGA MRIMRSYYKL 60
61 LRGFATEVKD KVWFLEGVTQ VLPQDVDEYS GGGGMHMMLD FLGGGLPSMT TTNFSDFSL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.932 | 0.078 | sterol biosynthetic process | a.118.8 | TPR-like |
|
Region A: Residues: [757-913] |
1 11 21 31 41 51
| | | | | |
1 NIISVDLSDL GDVINPDVGT ITELVCFDES IADLYPVGLD SPYLITLAYL DKLHREKNQG 60
61 DFILRVFTFP ALLDKTFLAL LMTGDLGAMR IMRSYYKLLR GFATEVKDKV WFLEGVTQVL 120
121 PQDVDEYSGG GGMHMMLDFL GGGLPSMTTT NFSDFSL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.932 | a.118.8 | TPR-like |
