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View Structure Prediction Details

Protein: YDR210W-A
Organism: Saccharomyces cerevisiae
Length: 438 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR210W-A.

Description E-value Query
Range
Subject
Range
YBR012W-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YB12B_YEAST - Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY...
550.0 [0..1] [431..1]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLHQNP HSQHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV NSQEETTPGT  60
   61 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120
  121 YYQPDPHYPL PQYIPPLSTS SPDPIDSQDQ HSEVPQAKTK VRNNVLPPH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 76.468521
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLTSEENFST WVKFYIRFLK NSNLGDIIPN DQGEIKRQMT YEEHAYIYNT FQAFAPFHLL  60
   61 PTWVKQILEI NYSDILTVLC KSVSKMQTNN QELKDWIALA NLEYNGSTSA DTFEITVSTI 120
  121 IQRLKENNIN VSDRLACQLI LKGLSGDFKY LRNQYRTK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [328-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNMKLSQLFA EIQLIYDENK IMNLNKPSQY KQHSEYKNVS RTSPNTTNTK VTTRNYHRTN  60
   61 SSKPRAAKAH NIATSSKFSR VNSDHINEST VSSQYLSDDN ELSLRPATER I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle