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View Structure Prediction Details

Protein: YDR210W-A
Organism: Saccharomyces cerevisiae
Length: 438 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR210W-A.

Description E-value Query
Range
Subject
Range
YBR012W-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YB12B_YEAST - Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY...
550.0 [0..1] [431..1]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLHQNP HSQHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV NSQEETTPGT  60
   61 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120
  121 YYQPDPHYPL PQYIPPLSTS SPDPIDSQDQ HSEVPQAKTK VRNNVLPPH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 76.468521
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLTSEENFST WVKFYIRFLK NSNLGDIIPN DQGEIKRQMT YEEHAYIYNT FQAFAPFHLL  60
   61 PTWVKQILEI NYSDILTVLC KSVSKMQTNN QELKDWIALA NLEYNGSTSA DTFEITVSTI 120
  121 IQRLKENNIN VSDRLACQLI LKGLSGDFKY LRNQYRTK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.678 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.645 a.40.1 Calponin-homology domain, CH-domain
View Download 0.457 a.40.1 Calponin-homology domain, CH-domain
View Download 0.432 a.61.1 Retroviral matrix proteins
View Download 0.404 d.55.1 Ribosomal protein L22

Predicted Domain #3
Region A:
Residues: [328-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNMKLSQLFA EIQLIYDENK IMNLNKPSQY KQHSEYKNVS RTSPNTTNTK VTTRNYHRTN  60
   61 SSKPRAAKAH NIATSSKFSR VNSDHINEST VSSQYLSDDN ELSLRPATER I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.405 N/A N/A a.1.1 Globin-like
View Download 0.391 N/A N/A d.58.42 N-utilization substance G protein NusG, N-terminal domain
View Download 0.391 N/A N/A d.58.42 N-utilization substance G protein NusG, N-terminal domain
View Download 0.376 N/A N/A a.29.17 Description not found.
View Download 0.369 N/A N/A d.150.1 4'-phosphopantetheinyl transferase
View Download 0.369 N/A N/A d.150.1 4'-phosphopantetheinyl transferase
View Download 0.359 N/A N/A d.95.2 Homing endonucleases
View Download 0.339 N/A N/A c.47.1 Thioredoxin-like
View Download 0.231 N/A N/A c.23.5 Flavoproteins


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle