YRC Public Data Repository - Protein Structure Prediction

Protein:	STB3
Organism:	Saccharomyces cerevisiae
Length:	513 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STB3.

Description	E-value	Query Range	Subject Range
gi\|50286595, gi\|... - gi\|50286595\|ref\|XP_445726.1\| unnamed protein product [Candida glabrata], gi\|49525032\|emb\|CAG58645.1\|...	244.0	[0..43]	[513..2]
STB3_ASHGO - Protein STB3 OS=Ashbya gossypii GN=STB3 PE=3 SV=1 STB3_ASHGO - Protein STB3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=STB3 P...	193.0	[0..24]	[513..94]
gi\|49642958 - gi\|49642958\|emb\|CAH00920.1\| KLLA0D17270p [Kluyveromyces lactis] gi\|49642958, gi\|... - gi\|50307689\|ref\|XP_453824.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642958\|emb\|CAH0092...	169.0	[0..27]	[451..96]
STB3_SCHPO - Protein STB3 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stb3 PE=1 SV=1 SPBC1652.01 - conserved fungal protein	145.0	[0..11]	[118..83]
gi\|68042773 - gi\|68042773\|ref\|NP_001019056.1\| hypothetical protein SPBC1652.01 [Schizosaccharomyces pombe 972h-]	144.0	[0..11]	[118..80]
orf19.7833, orf1... - STB3 CGDID:CAL0003869 Assembly 19, Contig19-10045 (11777, 10266) CDS, reverse complemented, translat... gi\|46433988, gi\|... - gi\|68487112\|ref\|XP_712559.1\| hypothetical protein CaO19.7833 [Candida albicans SC5314], gi\|68487055\|... gi\|238883771 - gi\|238883771\|gb\|EEQ47409.1\| conserved hypothetical protein [Candida albicans WO-1]	102.0	[0..30]	[155..61]
gi\|50548327, gi\|... - gi\|50548327\|ref\|XP_501633.1\| hypothetical protein [Yarrowia lipolytica], gi\|49647500\|emb\|CAG81936.1\|...	100.0	[0..9]	[186..235]
gi\|49653049, gi\|... - gi\|50414240\|ref\|XP_457384.1\| hypothetical protein DEHA0B10164g [Debaryomyces hansenii CBS767], gi\|49...	96.0	[0..2]	[115..26]
gi\|49093476, gi\|... - gi\|67527367\|ref\|XP_661666.1\| hypothetical protein AN4062.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	84.0	[0..8]	[113..243]
gi\|66847918, gi\|... - gi\|70990874\|ref\|XP_750286.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668479...	81.0	[0..9]	[113..72]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENQKEVSP PQAISVKSEA SSSIFSKPIS TSSPAGLAAA QRVTPGKLST LLLEMGPLAI  60
   61 RHITQTLCLD IPCFKDLSSS KQRRLIMSAM ESGDKEKSVV FEKIGWGQWS AKRVDPAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [119-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDKELEATNF ANAKVKDLIS QESQRRKSNN SNSNSGGKVE MPMKVEHNIT NIDGATTPPT  60
   61 AVASTTIPVN IKRSKSPLAA ANVVYIDENA LASEDEDEEF DEDDHHLHYQ NKSRNSSNNF 120
  121 GKSSNGDPYS FGRRRSQVVF ADSTPENIEH EIIAQKIRPL LRNRRRSSIK PHTPFISKLN 180
  181 THQDSSYLSP NTTSTTTPSN NNSNSNQAKI DLEKLTATSE PTSRRASRLS VSKESSIRST 240
  241 LFPNKNYLIV TTNPNSKATS VSTSPKLEEQ MNVSSNPIVL SDKEKHRVAS QHLNGESSPQ 300
  301 LVPHSHHQPH SDTDEEDWES IGAASLRNNS LAPNIDSVAS STNGVVSPKP TNPSFTNSQN 360
  361 GDIEPPLQHD QQKHEQQPRN GEDNSAAFLL MSLKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits