| Protein: | SEC1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 724 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..724] | [1..724] |
|
|
0.0 | [9..649] | [12..593] |
|
|
0.0 | [9..649] | [12..593] |
|
|
0.0 | [2..649] | [4..593] |
|
|
0.0 | [8..649] | [11..594] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MSDLIELQRN YLIGVLNQIE TKNNLKFLII DKTVETILSY LFLTPQELLN NVTSVDLIDS 60
61 PTRKGQSSIE AIYILEPTKY NINCIDADFM VRPPKYRRCH IRFLPGLTNP IFQFFQSKRY 120
121 IAQNLESFKP IE
|
| Detection Method: |  |
| Confidence: | 639.54902 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNARE binding | 4.56428593085019 | bayes_pls_golite062009 |
| syntaxin binding | 3.46044132736061 | bayes_pls_golite062009 |
| binding | 2.7837022903231 | bayes_pls_golite062009 |
| protein binding | 2.77285532000616 | bayes_pls_golite062009 |
| syntaxin-1 binding | 0.269372794919901 | bayes_pls_golite062009 |
|
Region A: Residues: [133-264] |
1 11 21 31 41 51
| | | | | |
1 LGFFVKESQF FETLQMEHSL QVFFNNNCKA LIPTNVRKIV GSLVSLCVIT GEYPIVRYSV 60
61 SNPVEEEDAR NGNAVVNANS LTRSIANAFQ IAIDTYARNN PDFPPQNTER PRSILIITDR 120
121 TLDPFAPILH DF
|
|
Region B: Residues: [514-657] |
1 11 21 31 41 51
| | | | | |
1 VPAVGNILSK VIANPLLLSE QYFPYLKDKP IELLNEEEFQ AGLANTSANS SSSLRNPRHK 60
61 AAWTTKSSNI KKNIPRQRFF YYVIGGISIP EIKAAYDQSN LKNRDIFIGS DEILTPTKFL 120
121 DEVERLQNPR EFFKFKEDQR QQVN
|
| Detection Method: | |
| Confidence: | 639.54902 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [265-384] |
1 11 21 31 41 51
| | | | | |
1 SYQAMAYDLV ANVDTQKDIY HYSAENEAGE QEEKVSKLVD LYDPDWIDLK HQHIMDANEY 60
61 IQGRIKELIA KNPLLVDRSN VKNTTDLLSV VAHLKDFDEE RRRLILHKTL VDECLGENAE 120
121
|
| Detection Method: | |
| Confidence: | 639.54902 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [385-513] |
1 11 21 31 41 51
| | | | | |
1 RKLADISAIE QNLSGFGMDF SGEKIKHIID DLLPALAMKE PTILDKLRYI IAYALFRGGI 60
61 IELDFIKLLN FIGVTHEHEN FQQYLKIFRN YDLIDFKLIK DKPKDKPFQK EWFHDTLVND 120
121 PNIYHTSRF
|
| Detection Method: | |
| Confidence: | 639.54902 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [658-724] |
1 11 21 31 41 51
| | | | | |
1 PPDFLLREMK PVAQPVSHVH LKSQDNSPKS GTSSPKAAGS LKSEPPEKEK KRSKFSRFLK 60
61 RKSHHDK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
