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Protein Overview: gi|190404882

General Information:
Name(s) found: gi|190404882 [NCBI NR]
Description(s) found:
  • gi|190404882|gb|EDV08149.1| SNARE docking complex subunit [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 724 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLIELQRN YLIGVLNQIE TKNNLKFLII DKTVETILSY LFLTPQELLN NVTSVDLIDS  60
   61 PTRKGQSSIE AIYILEPTKY NINCIDADFM VRPPKYRRCH IRFLPGLTNP IFQFFQSKRY 120
  121 IAQNLESFKP IELGFFVKES QFFETLQMEH SLQVFFNNNC KALIPTNVRK IVGSLVSLCV 180
  181 ITGEYPIVRY SVSNPVEEED ARNGNAVVNA NSLTRSIANA FQIAIDTYAR NNPDFPPQNT 240
  241 ERPRSILIIT DRTLDPFAPI LHDFSYQAMA YDLVANVDTQ KDIYHYSAEN EAGEQEEKVS 300
  301 KLVDLYDPDW IDLKHQHIMD ANEYIQGRIK ELIAKNPLLV DRSNVKNTTD LLSVVAHLKD 360
  361 FDEERRRLIL HKTLVDECLG ENAERKLADI SAIEQNLSGF GMDFSGEKIK HIIDDLLPAL 420
  421 AMKEPTILDK LRYIIAYALF RGGIIELDFI KLLNFIGVTH EHENFQQYLK IFRNYDLIDF 480
  481 KLIKDKPKDK PFQKEWFHDT LVNDPNIYHT SRFVPAVGNI LSKVIANPLL LSEQYFPYLK 540
  541 DKPIELLNEE EFQAGLANTS ANSSSSLRNP RHKAAWTTKS SNIKKNIPRQ RFFYYVIGGI 600
  601 SIPEIKAAYD QSNLKNRDIF IGSDEILTPT KFLDEVERLQ NPREFFKFKE DQRQQVNPPD 660
  661 FLLREMKPVA QPVSHVHLKS QDNSPKSGTS SPKAAGSLKS EPPEKEKKRS KFSRFLKRKS 720
  721 HHDK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 639.54902 Neuronal Sec1, NSec1
    2 View Details [133..264]
    [514..657]    		 PSI-BLAST 639.54902 Neuronal Sec1, NSec1
    3 View Details [265..384] PSI-BLAST 639.54902 Neuronal Sec1, NSec1
    4 View Details [385..513] PSI-BLAST 639.54902 Neuronal Sec1, NSec1
    5 View Details [658..724] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNARE binding
    		•  4.56428593085019 bayes_pls_golite062009
  • syntaxin binding
    		•  3.46044132736061 bayes_pls_golite062009
  • binding
    		•  2.7837022903231 bayes_pls_golite062009
  • protein binding
    		•  2.77285532000616 bayes_pls_golite062009
  • syntaxin-1 binding
    		•  0.269372794919901 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle