YRC Public Data Repository - Protein Structure Prediction

Protein:	CWC15
Organism:	Saccharomyces cerevisiae
Length:	175 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CWC15.

Description	E-value	Query Range	Subject Range
gi\|190404883 - gi\|190404883\|gb\|EDV08150.1\| pre-mRNA splicing factor CWC15 [Saccharomyces cerevisiae RM11-1a] CWC15 - Non-essential protein involved in pre-mRNA splicing, component of a complex containing Cef1p; has si... CWC15_YEAST - Pre-mRNA-splicing factor CWC15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC15 PE=...	5.0E-82	[1..175]	[1..175]
gi\|14250229 - gi\|14250229\|gb\|AAH08537.1\| Zfp292 protein [Mus musculus]	0.003	[54..121]	[1122..1192]

Back

Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSHRPQLE ARSGAKAAAY TPTGIEHARL LPGHTTLKYR KFKEEENLRA NCAQEDRSND  60
   61 KSLEEAVMNE EKQDVVGSGN LQETRSEKDQ KDSLQELLVT QKNKVEDKAE LEGNEQLKGG 120
  121 NSSRRSWRKG TAFGRHKVTK ETNIKEHATK KSASGYINDM TKSEYHQEFL HKHVR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits