YRC Public Data Repository - Protein Structure Prediction

Protein:	RGP1
Organism:	Saccharomyces cerevisiae
Length:	663 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGP1.

Description	E-value	Query Range	Subject Range
gi\|4320 - gi\|4320\|emb\|CAA36300.1\| unnamed protein product [Saccharomyces cerevisiae]	1126.0	[0..1]	[663..1]
gi\|85110754 - gi\|85110754\|ref\|XP_963615.1\| hypothetical protein NCU06774 [Neurospora crassa OR74A] gi\|18376017, gi\|... - gi\|32413160\|ref\|XP_327060.1\| hypothetical protein [Neurospora crassa], gi\|28925301\|gb\|EAA34379.1\| co...	551.0	[0..130]	[617..452]
gi\|49524344 - gi\|49524344\|emb\|CAG57941.1\| unnamed protein product [Candida glabrata] gi\|49524344, gi\|... - gi\|50285225\|ref\|XP_445041.1\| unnamed protein product [Candida glabrata], gi\|49524344\|emb\|CAG57941.1\|...	356.0	[0..1]	[663..1]
gi\|88176537, gi\|... - gi\|88176537\|gb\|EAQ84005.1\| hypothetical protein CHGG_10409 [Chaetomium globosum CBS 148.51], gi\|1162...	348.0	[0..130]	[611..294]
gi\|39971705, gi\|... - gi\|39971705\|ref\|XP_367243.1\| hypothetical protein MG07168.4 [Magnaporthe grisea 70-15], gb\|EAA56813....	341.0	[0..118]	[617..111]
gi\|42546665, gi\|... - gi\|46108150\|ref\|XP_381133.1\| hypothetical protein FG00957.1 [Gibberella zeae PH-1], gi\|42546665\|gb\|E...	335.0	[0..130]	[653..202]
gi\|111063898 - gi\|111063898\|gb\|EAT85018.1\| hypothetical protein SNOG_07552 [Phaeosphaeria nodorum SN15]	294.0	[0..129]	[653..492]
gi\|44985688 - gi\|44985688\|gb\|AAS54312.1\| AGL179Cp [Ashbya gossypii ATCC 10895] gi\|45200918, gi\|... - gi\|45200918\|ref\|NP_986488.1\| AGL179Cp [Ashbya gossypii ATCC 10895], gi\|44985688\|gb\|AAS54312.1\| AGL17...	271.0	[0..1]	[663..23]
gi\|71001778, gi\|... - gi\|71001778\|ref\|XP_755570.1\| intracellular protein transport protein (Sat1) [Aspergillus fumigatus A... gi\|159129630 - gi\|159129630\|gb\|EDP54744.1\| intracellular protein transport protein (Sat1), putative [Aspergillus fu...	269.0	[0..132]	[653..359]
gi\|49644743\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50311167, gi\|... - gi\|50311167\|ref\|XP_455607.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644743\|emb\|CAG9831...	267.0	[0..1]	[663..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAHRIDTFL IRENIKLEII HESNSYFGGE HISIAFRFKH LGSQHELFNY KEKLLTVDKA  60
   61 VEEKLEQQAK VQDDGEGTME NQTWSLKSLL GAFKRTGEPE ESVDVDNMKM LNESKMLREK 120
  121 IQKQMYFHQP VTLISGYVQI SGVFQYDSEV ISESKFKQDE VKMVGLDIVP GHTTNSVLAL 180
  181 EDGEHFK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKRNLTNYLN SDYTNVTNGL LFSESGSRGR TGTYNERTLM ISNDTSIKTL PLLLIPQTLL  60
   61 FSEISLEPGE VRTFYFKSTK LPKDICPSYS SSKVASINYT LEVGADVLSD DNIEKFSNRV 120
  121 PITIAPYISS NAEQYTSRLD KPAIILKTGN IKELKPRLFT RKV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [351-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STASAVSFGR RKSSIIDIDS PLEDNEFVKR VKKNFIELVE SNQNVSRDID ELIDLQMGVQ  60
   61 FGKDEDSSDP EPNDSHFSNE MVTSAESSLR SDAVTKRRKS YSVRD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [456-663]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NISNLEQKMW NDCSLVKSDE NSNLLPQLIN LQNAYQINRN NETMAKVSLS APFYKTTDDI  60
   61 NLVIELDPIT TPLLKVTSLT VSLESFEIIN PKYKTEGKGI GSKPKGNSVY EKHFICFDEC 120
  121 KSVSVKLLPP RSPTNQITGQ FKTDVFQHKW MIGLKFVIIA KTESITLDQF YEDKKGILFH 180
  181 SKENLEGEEF TCYVPIPILC TSEDFMGW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits