| Protein: | RGP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 663 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGP1.
| Description | E-value | Query Range |
Subject Range |
|
|
1126.0 | [0..1] | [663..1] |
|
|
551.0 | [0..130] | [617..452] |
|
|
356.0 | [0..1] | [663..1] |
|
|
348.0 | [0..130] | [611..294] |
|
|
341.0 | [0..118] | [617..111] |
|
|
335.0 | [0..130] | [653..202] |
|
|
294.0 | [0..129] | [653..492] |
|
|
271.0 | [0..1] | [663..23] |
|
|
269.0 | [0..132] | [653..359] |
|
|
267.0 | [0..1] | [663..1] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MRAHRIDTFL IRENIKLEII HESNSYFGGE HISIAFRFKH LGSQHELFNY KEKLLTVDKA 60
61 VEEKLEQQAK VQDDGEGTME NQTWSLKSLL GAFKRTGEPE ESVDVDNMKM LNESKMLREK 120
121 IQKQMYFHQP VTLISGYVQI SGVFQYDSEV ISESKFKQDE VKMVGLDIVP GHTTNSVLAL 180
181 EDGEHFK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [188-350] |
1 11 21 31 41 51
| | | | | |
1 GKRNLTNYLN SDYTNVTNGL LFSESGSRGR TGTYNERTLM ISNDTSIKTL PLLLIPQTLL 60
61 FSEISLEPGE VRTFYFKSTK LPKDICPSYS SSKVASINYT LEVGADVLSD DNIEKFSNRV 120
121 PITIAPYISS NAEQYTSRLD KPAIILKTGN IKELKPRLFT RKV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [351-455] |
1 11 21 31 41 51
| | | | | |
1 STASAVSFGR RKSSIIDIDS PLEDNEFVKR VKKNFIELVE SNQNVSRDID ELIDLQMGVQ 60
61 FGKDEDSSDP EPNDSHFSNE MVTSAESSLR SDAVTKRRKS YSVRD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.530 | a.26.1 | 4-helical cytokines |
| View | Download | 0.475 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.470 | a.26.1 | 4-helical cytokines |
| View | Download | 0.318 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.310 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.304 | d.15.11 | Doublecortin (DC) |
| View | Download | 0.304 | d.15.11 | Doublecortin (DC) |
| View | Download | 0.286 | a.26.1 | 4-helical cytokines |
| View | Download | 0.261 | a.118.8 | TPR-like |
| View | Download | 0.257 | d.74.3 | RBP11-like subunits of RNA polymerase |
|
Region A: Residues: [456-663] |
1 11 21 31 41 51
| | | | | |
1 NISNLEQKMW NDCSLVKSDE NSNLLPQLIN LQNAYQINRN NETMAKVSLS APFYKTTDDI 60
61 NLVIELDPIT TPLLKVTSLT VSLESFEIIN PKYKTEGKGI GSKPKGNSVY EKHFICFDEC 120
121 KSVSVKLLPP RSPTNQITGQ FKTDVFQHKW MIGLKFVIIA KTESITLDQF YEDKKGILFH 180
181 SKENLEGEEF TCYVPIPILC TSEDFMGW
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
