YRC Public Data Repository - Protein Structure Prediction

Protein:	SSS1
Organism:	Saccharomyces cerevisiae
Length:	80 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSS1.

Description	E-value	Query Range	Subject Range
SC61G_YEAST - Protein transport protein SSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSS1 PE=1... gi\|151942076 - gi\|151942076\|gb\|EDN60432.1\| Sec61 trimeric complex component [Saccharomyces cerevisiae YJM789] SSS1 - Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p) that forms a channel for passage of... gi\|190404947 - gi\|190404947\|gb\|EDV08214.1\| protein transport protein SEC61 gamma subunit [Saccharomyces cerevisiae ...	2.0E-26	[1..80]	[1..80]
gi\|268607536\|ref... - Sec61 gamma subunit [Danio rerio], Uncharacterized protein OS=Danio rerio GN=sec61g PE=3 SV=1 SC61G_MOUSE - Protein transport protein Sec61 subunit gamma OS=Mus musculus GN=Sec61g PE=3 SV=1 gi\|197246400, gi... - gi\|203097935\|ref\|NP_001128492.1\| SEC61, gamma subunit [Rattus norvegicus], gi\|197246400\|gb\|AAI68779.... gi\|149704862 - gi\|149704862\|ref\|XP_001498730.1\| PREDICTED: similar to SEC61 gamma [Equus caballus] gi\|542156480\|ref... - PREDICTED: protein transport protein Sec61 subunit gamma isoform X2 [Zonotrichia albicollis], PREDIC... SEC61G - Sec61 gamma subunit gi\|118086257 - gi\|118086257\|ref\|XP_001236152.1\| PREDICTED: similar to SEC61 gamma [Gallus gallus] gi\|114613545 - gi\|114613545\|ref\|XP_001152525.1\| PREDICTED: similar to SEC61 gamma [Pan troglodytes] gi\|117645636 - gi\|117645636\|emb\|CAL38284.1\| hypothetical protein [synthetic construct] CCDS5513.1_1 - null gi\|109066539 - gi\|109066539\|ref\|XP_001107920.1\| PREDICTED: similar to Protein transport protein SEC61 gamma subunit... HGNC:18277\|MIM:6... - gamma subunit tr\|G3HEF5\|G3HEF5... - Protein transport protein Sec61 subunit gamma OS=Cricetulus griseus GN=I79_008939 PE=3 SV=1 SC61G_BOVIN - Protein transport protein Sec61 subunit gamma OS=Bos taurus GN=SEC61G PE=3 SV=1 SC61G_CANLF - Protein transport protein Sec61 subunit gamma OS=Canis lupus familiaris GN=SEC61G PE=1 SV=1 gi\|221220970 - gi\|221220970\|gb\|ACM09146.1\| transport protein Sec61 subunit gamma [Salmo salar] ENSOCUP00000018881 - pep:novel chromosome:oryCun2:10:45982069:45988756:1 gene:ENSOCUG00000011065 transcript:ENSOCUT000000...	1.0E-23	[16..80]	[2..66]
SC61G_BRABE - Protein transport protein Sec61 subunit gamma OS=Branchiostoma belcheri GN=SEC61G PE=3 SV=1 gi\|229277345, gi... - gi\|229277345\|gb\|EEN48141.1\| hypothetical protein BRAFLDRAFT_114863 [Branchiostoma floridae], gi\|2194...	2.0E-23	[16..80]	[2..66]
emo-1 - protein transport protein SEC61 gamma subunit status:Confirmed UniProt:Q19967 protein_id:CAA98458.1 gi\|157763110, gi... - gi\|157763110\|ref\|XP_001673897.1\| Hypothetical protein CBG09730 [Caenorhabditis briggsae AF16], gi\|15... gi\|39593451, gi\|... - gi\|39593451\|emb\|CAE64921.1\| Hypothetical protein CBG09741 [Caenorhabditis briggsae], gi\|39593440\|emb...	4.0E-23	[16..80]	[2..66]
S61G_ORYSA, SC61... - Protein transport protein SEC61 subunit gamma - Oryza sativa (Rice), (P38385) Protein transport prot... gi\|357123352\|ref... - PREDICTED: protein transport protein Sec61 subunit gamma-like [Brachypodium distachyon] gi\|125538321, gi... - gi\|149392497\|gb\|ABR26051.1\| protein transport protein sec61 gamma subunit [Oryza sativa (indica cult... SC61G_ORYSJ - Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica GN=Os02g0178400 PE=3 S...	1.0E-22	[16..80]	[2..66]
S61G2_ARATH, S61... - Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana GN=SEC61G2 PE=1 SV=1, Protei...	2.0E-22	[16..80]	[2..66]
gi\|220959514, gi... - gi\|220959514\|gb\|ACL92300.1\| Sec61gamma-PA [synthetic construct], gi\|220950822\|gb\|ACL87954.1\| Sec61ga... Sec61gamma-PA, F... - The gene Sec61Ã?Ã?Â³ is referred to in FlyBase by the symbol Dmel\Sec61Ã?Ã?Â³ (CG14214, ... gi\|195345779, gi... - gi\|195345779\|ref\|XP_002039446.1\| GM22977 [Drosophila sechellia], gi\|194134672\|gb\|EDW56188.1\| GM22977... gi\|195479708, gi... - gi\|195479708\|ref\|XP_002100996.1\| GE15861 [Drosophila yakuba], gi\|194188520\|gb\|EDX02104.1\| GE15861 [D...	2.0E-21	[16..80]	[2..66]
gi\|7447154 - pir\|\|H71614 protein translocation complex, sec61 gamma chain PFB0450w - malaria parasite (Plasmodium... gi\|3845187, gi\|1... - gi\|3845187\|gb\|AAC71879.1\| sec61 gamma subunit, putative [Plasmodium falciparum 3D7], gi\|16804989\|ref...	8.0E-21	[15..80]	[13..78]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARASEKGEE KKQSNNQVEK LVEAPVEFVR EGTQFLAKCK KPDLKEYTKI VKAVGIGFIA  60
   61 VGIIGYAIKL IHIPIRYVIV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.920819
Match:	PF00584
Description:	SecE/Sec61-gamma subunits of protein translocation complex

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits