YRC Public Data Repository - Protein Structure Prediction

Protein:	RTR2
Organism:	Saccharomyces cerevisiae
Length:	196 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTR2.

Description	E-value	Query Range	Subject Range
RTR1_YEAST - RNA polymerase II subunit B1 CTD phosphatase RTR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ... gi\|151944857 - gi\|151944857\|gb\|EDN63116.1\| conserved protein [Saccharomyces cerevisiae YJM789] RTR1 - CTD phosphatase; dephosphorylates S5-P in the C-terminal domain of Rpo21p; has a cysteine-rich motif... gi\|207345837 - gi\|207345837\|gb\|EDZ72529.1\| YER139Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405698 - gi\|190405698\|gb\|EDV08965.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	215.0	[0..9]	[191..7]
gi\|49526859 - gi\|49526859\|emb\|CAG60486.1\| unnamed protein product [Candida glabrata] gi\|49526859, gi\|... - gi\|50290235\|ref\|XP_447549.1\| hypothetical protein CAGL0I06875g [Candida glabrata CBS138], gi\|4952685...	172.0	[0..13]	[191..10]
RPAP2_ARATH - Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g2...	157.0	[0..20]	[185..5]
SPAC23A1.16c - DUF408 family protein RPAP2_SCHPO - Putative RNA polymerase II subunit B1 CTD phosphatase rtr1 OS=Schizosaccharomyces pombe (strain 972 ...	143.0	[0..47]	[164..55]
gi\|74183552, gi\|... - gi\|74183552\|dbj\|BAE36627.1\| unnamed protein product [Mus musculus], gi\|254540045\|ref\|NP_001156933.1\|...	139.0	[0..29]	[123..60]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIITTTFIQ KVILGSHQLH EQLSIVEARM IESAIVSMLT ESFCENEQTL KYLARLLSPM  60
   61 SYMDVINARR GKKICGYPLC YKSAAENSSD GFFIHSMYCN NYHSKCSLYL MRQLSQTPLH 120
  121 ERRGVHLTSY INLEFDDMYS VSLLEELVGS EVPIDTVKSL ITSFKDLEFD DTYKNEPLPL 180
  181 DVYFGQLTTD EETCIE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits