YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS13
Organism:	Saccharomyces cerevisiae
Length:	151 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS13.

Description	E-value	Query Range	Subject Range
RS13_CHICK - 40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3 CCDS7823.1_1 - null gi\|51980681 - gb\|AAH82187.1\| Unknown (protein for MGC:98670) [Xenopus laevis] gi\|55635357 - gi\|55635357\|ref\|XP_508306.1\| PREDICTED: hypothetical protein [Pan troglodytes] ENSCJAT00000018561 - null gi\|109107163 - gi\|109107163\|ref\|XP_001086088.1\| PREDICTED: similar to ribosomal protein S13 [Macaca mulatta] RS13_MOUSE - 40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2 gi\|197127940, gi... - gi\|197127940\|gb\|ACH44438.1\| putative ribosomal protein S13 variant 1 [Taeniopygia guttata], gi\|19712... RPS13 - ribosomal protein S13 RS13_BOVIN - 40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3 gi\|73988614, gi\|... - gi\|73988614\|ref\|XP_864902.1\| PREDICTED: similar to ribosomal protein S13 isoform 2 [Canis familiaris... gi\|123995225, gi... - gi\|61359234\|gb\|AAX41687.1\| ribosomal protein S13 [synthetic construct], gi\|123995225\|gb\|ABM85214.1\| ... gi\|542155715\|ref... - PREDICTED: 40S ribosomal protein S13 isoform X2 [Zonotrichia albicollis], PREDICTED: 40S ribosomal p... ENSOCUP000000048... - pep:novel scaffold:oryCun2:GL018733:1083722:1086211:-1 gene:ENSOCUG00000005536 transcript:ENSOCUT000... tr\|M3W3Y8\|M3W3Y8... - Ribosomal protein S13 OS=Felis catus GN=RPS13 PE=3 SV=1 RS13_RAT - 40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=1 SV=2 gi\|149719481 - gi\|149719481\|ref\|XP_001504999.1\| PREDICTED: similar to ribosomal protein S13 [Equus caballus] gi\|57730 - gi\|57730\|emb\|CAA37458.1\| unnamed protein product [Rattus rattus]	3.0E-70	[1..150]	[1..150]
RS13_XENLA - 40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2 gi\|89269947, gi\|... - gi\|89269947\|emb\|CAJ81269.1\| ribosomal protein S13 [Xenopus tropicalis], gi\|62860010\|ref\|NP_001016602...	5.0E-70	[1..150]	[1..150]
RS13_CRIGR - 40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3	8.0E-70	[1..150]	[1..150]
RS13_ICTPU - 40S ribosomal protein S13 OS=Ictalurus punctatus GN=rps13 PE=2 SV=3	3.0E-69	[1..150]	[1..150]
RS13_GILMI - 40S ribosomal protein S13 OS=Gillichthys mirabilis GN=rps13 PE=2 SV=3	1.0E-68	[1..150]	[1..150]
RS13_SPOFR - 40S ribosomal protein S13 OS=Spodoptera frugiperda GN=RpS13 PE=2 SV=3	4.0E-68	[1..150]	[1..150]
RS13_LUMRU - 40S ribosomal protein S13 OS=Lumbricus rubellus GN=RPS13 PE=2 SV=3	2.0E-66	[1..150]	[1..150]
RS13_CANMA - 40S ribosomal protein S13 OS=Candida maltosa GN=RPS13 PE=3 SV=2	8.0E-66	[1..150]	[1..150]
RpS13-PB, RpS13-... - The gene Ribosomal protein S13 is referred to in FlyBase by the symbol Dmel\RpS13 (CG13389, FBgn0010... gi\|220944854, gi... - gi\|220954764\|gb\|ACL89925.1\| RpS13-PA [synthetic construct], gi\|220944854\|gb\|ACL84970.1\| RpS13-PA [sy...	1.0E-65	[1..150]	[1..150]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRMHSAGKG ISSSAIPYSR NAPAWFKLSS ESVIEQIVKY ARKGLTPSQI GVLLRDAHGV  60
   61 TQARVITGNK IMRILKSNGL APEIPEDLYY LIKKAVSVRK HLERNRKDKD AKFRLILIES 120
  121 RIHRLARYYR TVAVLPPNWK YESATASALV N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	303.69897
Match:	1k5xO_
Description:	No description for 1k5xO_ was found.

Predicted Domain #2

Region A:
Residues: [61-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQARVITGNK IMRILKSNGL APEIPEDLYY LIKKAVSVRK HLERNRKDKD AKFRLILIES  60
   61 RIHRLARYYR TVAVLPPNWK YESATASALV N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	1yshE
Description:	Localization and dynamic behavior of ribosomal protein L30e
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits