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View Structure Prediction Details

Protein: PST1
Organism: Saccharomyces cerevisiae
Length: 444 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PST1.

Description E-value Query
Range
Subject
Range
SPS22 - Protein of unknown function, redundant with Sps2p for the organization of the beta-glucan layer of t...
SPS22_YEAST - Sporulation-specific protein 22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPS22 PE...
236.0 [0..13] [390..55]
meu10 - GPI anchored cell surface protein
MEU10_SCHPO - Meiotic expression up-regulated protein 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...
224.0 [0..6] [414..2]
gi|49528738 - gi|49528738|emb|CAG62400.1| unnamed protein product [Candida glabrata]
gi|49528738, gi|... - gi|50294025|ref|XP_449424.1| hypothetical protein CAGL0M01826g [Candida glabrata CBS138], gi|4952873...
196.0 [0..10] [354..8]
gi|49641980 - gi|49641980|emb|CAH01698.1| KLLA0C14454p [Kluyveromyces lactis]
gi|50305773, gi|... - gi|50305773|ref|XP_452847.1| unnamed protein product [Kluyveromyces lactis], gi|49641980|emb|CAH0169...
190.0 [0..1] [366..1]
gi|2388938 - gi|2388938|emb|CAB11673.1| SPAC1705.03c [Schizosaccharomyces pombe]
184.0 [0..3] [365..2]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLHSLIAST ALLITSALAA TSSSSSIPSS CTISSHATAT AQSDLDKYSR CDTLVGNLTI  60
   61 GGGLKTGALA NVKEINGSLT IFNATNLTSF AADSLESITD SLNLQSLTIL TSASFGSLQS 120
  121 VDSIKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 1h6uA
Description: Internalin H
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [127-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITLPAISSFT SNIKSANNIY ISDTSLQSVD GFSALKKVNV FNVNNNKKLT SIKSPVETVS  60
   61 DSLQFSFNGN QTKITFDDLV WANNISLTDV HSVSFANLQK INSSLGFINN SISSLNFTKL 120
  121 NTIGQTFSIV SNDYLKNLSF SNLSTIGGAL VVANNTGLQK IGGLDNLTTI GGTLEVVGNF 180
  181 TSLNLDSLKS VKGGADVESK SSNFSCNALK ALQKKGGIKG ESFVCKNGAS STSVKLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.30103
Match: 1g9uA
Description: Leucine rich effector protein YopM
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [364-444]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSKSQSSQT TAKVSKSSSK AEEKKFTSGD IKAAASASSV SSSGASSSSS KSSKGNAAIM  60
   61 APIGQTTPLV GLLTAIIMSI M

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.691 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.378 d.54.1 Enolase N-terminal domain-like
View Download 0.356 a.130.1 Chorismate mutase II
View Download 0.351 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.332 d.51.1 Eukaryotic type KH-domain (KH-domain type I)
View Download 0.300 d.201.1 SRP19
View Download 0.300 d.201.1 SRP19
View Download 0.294 d.58.17 Metal-binding domain
View Download 0.286 a.39.1 EF-hand
View Download 0.230 d.51.1 Eukaryotic type KH-domain (KH-domain type I)


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle