| Protein: | RAD28 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 506 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD28.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [8..452] | [835..1257] |
|
|
0.0 | [9..505] | [1027..1486] |
|
Region A: Residues: [1-317] |
1 11 21 31 41 51
| | | | | |
1 MDPFLEFRVG NISLNEFYRR TIQSEFERIL EDPLSNMKNY RFSKQSNYST KEKTPLSIGV 60
61 NCLDIDDTGQ VLLGGGDDGS LSIWGLDESL HRNDEGEQEL INKRLNYIKR QPHQSDDEPA 120
121 QIMGYKNKRT RINDNNTMRL VHSFQTQRNK YRMYRQSSAA VPVQRSHISN KTDSPIGFSE 180
181 TLSETDSEAS ISHHKYGITT LKWYKADNGM FFTGSNDKTV KIWDTNRFEA VQDINLGYKI 240
241 NQIDNNVVDD SSLLVVASED YYPRLIDLRT MNSGVTALGM GNQTRMQSEI LCCKFNPVRE 300
301 QIIACGDMEG GVKLWDL
|
| Detection Method: |  |
| Confidence: | 25.69897 |
| Match: | 1gxrA_ |
| Description: | Groucho/tle1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [318-405] |
1 11 21 31 41 51
| | | | | |
1 RMRNRLYSEL KRNKNRFKTI NNDDNDDQSD VYFSSNQSKA HLRCCSDIVW NSEGSELCSV 60
61 GMDGKLNVWR PFTEILQPEG LASYSQLG
|
| Detection Method: | |
| Confidence: | 70.30103 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [406-506] |
1 11 21 31 41 51
| | | | | |
1 TQDLSRIKYK KRVSRRLLWF DKFLLCITDN GEVEIYNTEE KKLWNKLEYP MVNQVKKNQA 60
61 SHCQFSSMIV QTNIMNSVGL KLFFGTNNNT VSDGGSIFEC S
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.634 | 0.038 | nucleus | a.130.1 | Chorismate mutase II |
| View | Download | 0.476 | 0.001 | DNA repair | d.15.11 | Doublecortin (DC) |
| View | Download | 0.647 | N/A | N/A | d.75.2 | DNA repair protein MutS, domain I |
| View | Download | 0.642 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.448 | N/A | N/A | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.444 | N/A | N/A | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.424 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.421 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.416 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.416 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.402 | N/A | N/A | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.396 | N/A | N/A | d.15.2 | CAD & PB1 domains |
| View | Download | 0.396 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.388 | N/A | N/A | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.386 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.384 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.383 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.381 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.378 | N/A | N/A | d.15.2 | CAD & PB1 domains |
| View | Download | 0.372 | N/A | N/A | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.371 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.362 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.360 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.356 | N/A | N/A | d.15.11 | Doublecortin (DC) |
| View | Download | 0.353 | N/A | N/A | a.130.1 | Chorismate mutase II |
| View | Download | 0.353 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.348 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.344 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.342 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.339 | N/A | N/A | d.15.2 | CAD & PB1 domains |
| View | Download | 0.337 | N/A | N/A | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.336 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.334 | N/A | N/A | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.325 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.324 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.321 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.318 | N/A | N/A | a.158.1 | F-box domain |
| View | Download | 0.314 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.314 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.314 | N/A | N/A | c.55.3 | Ribonuclease H-like |
| View | Download | 0.312 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.302 | N/A | N/A | d.82.2 | Frataxin-like |
| View | Download | 0.297 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.297 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.295 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.295 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.289 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.284 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.283 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.275 | N/A | N/A | d.26.1 | FKBP-like |
| View | Download | 0.275 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.274 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.271 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.270 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.270 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.268 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.267 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.267 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.265 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.263 | N/A | N/A | d.2.1 | Lysozyme-like |
| View | Download | 0.258 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.258 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.251 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.251 | N/A | N/A | b.3.5 | B repeat unit of collagen binding surface protein (cna) |
| View | Download | 0.250 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.248 | N/A | N/A | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.248 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.247 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.244 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.235 | N/A | N/A | d.120.1 | Cytochrome b5 |
| View | Download | 0.234 | N/A | N/A | c.49.1 | Pyruvate kinase, C-terminal domain |
| View | Download | 0.230 | N/A | N/A | c.49.1 | Pyruvate kinase, C-terminal domain |
| View | Download | 0.229 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.223 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.218 | N/A | N/A | c.97.1 | Cytidine deaminase-like |
| View | Download | 0.218 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.218 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.210 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.207 | N/A | N/A | c.108.1 | HAD-like |
| View | Download | 0.206 | N/A | N/A | d.58.25 | Killer toxin KP6 alpha-subunit |
| View | Download | 0.204 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.200 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.200 | N/A | N/A | d.131.1 | DNA clamp |
