YRC Public Data Repository - Protein Structure Prediction

Protein:	REG1
Organism:	Saccharomyces cerevisiae
Length:	1014 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REG1.

Description	E-value	Query Range	Subject Range
gi\|171666 - gi\|171666\|gb\|AAA34670.1\| Hex2 protein [Saccharomyces cerevisiae]	1525.0	[0..1]	[987..1]
gi\|49528041, gi\|... - gi\|50292593\|ref\|XP_448729.1\| unnamed protein product [Candida glabrata], gi\|49528041\|emb\|CAG61692.1\|... gi\|49528041 - gi\|49528041\|emb\|CAG61692.1\| unnamed protein product [Candida glabrata]	638.0	[0..1]	[1008..1]
gi\|44980771 - gi\|44980771\|gb\|AAS50676.1\| ABL095Wp [Ashbya gossypii ATCC 10895] gi\|44980771, gi\|... - gi\|45185135\|ref\|NP_982852.1\| ABL095Wp [Ashbya gossypii ATCC 10895], gi\|44980771\|gb\|AAS50676.1\| ABL09...	428.0	[0..47]	[1001..26]
gi\|49644412\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50310513, gi\|... - gi\|50310513\|ref\|XP_455276.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644412\|emb\|CAG9798...	266.0	[0..1]	[367..1]
YIDF_SCHPO - Uncharacterized protein C227.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.15... SPAC227.15 - protein phosphatase regulatory subunit Reg1	231.0	[0..96]	[289..210]
gi\|68472778, gi\|... - gi\|68472778\|ref\|XP_719454.1\| hypothetical protein CaO19.2005 [Candida albicans SC5314], gi\|46441273\|... orf19.2005 - REG1 CGDID:CAL0004320 Assembly 19, Contig19-10139 (38214, 41249) CDS, translated using codon table 1...	229.0	[0..48]	[707..11]
gi\|49652050, gi\|... - gi\|50405501\|ref\|XP_456386.1\| hypothetical protein DEHA0A01485g [Debaryomyces hansenii CBS767], gi\|49...	229.0	[0..48]	[752..14]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNLANYFA GKKDIENEHV NRNASHESNS KSDVKISGND NDNDEDMGPS VSMAVQAKND  60
   61 DDFHKSTFNL KRTRSMGLLD EYIDPTKKLL GRSDDLYDND NEYYDNSSNN S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNSSDDDYD DGYQEHSTSV SPPPADNDSY LIPQDDNDVV VEPERHVDYL SHEWKESEIS  60
   61 NSWKYIILKK KKRDVDLVNA ARLENASWRT WAKARNNLKT VSPEVVNWSK DSDVTWLYGP 120
  121 IVRDSEGNAQ SEEEHDLERG YGSDDENSKR ISMPTKNSKS IAAAPKPILK KRTVTEIIED 180
  181 NALWKLNEAR KHMTEMKHAS VIMDPNGNKN VHDDFDALAA QVNAQYYHYP KESNSSVSLK 240
  241 SQH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [355-774]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDKKDNSTIP NPVGENSNGG GDKGEEDLHL KSALHVQNNR STAQSNKSIL ENSTNDRKAN  60
   61 LDQNLNSPDN NRFPSSTSSS NRDNENNSMG LSSILTSNPS EKSNKPTKNR HIHFNDRVEQ 120
  121 CMALRYPASQ SEDDESDDEN KQYVDVNNNA NVTTINNNRT PLLAIQHKSI PINSATEHLN 180
  181 KNTSDDDTSS QSSSSSHSDD EEHGGLYINA RFSRRSDSGV HSPITDNSSV ASSTTSRAHV 240
  241 RPIIKLLPDT TLNYGSDEES DNGEFNGYGN AVSHNVNTSR GYDYIYDYNS VYTGDTSSFL 300
  301 PVDSCDIVDV PEGMDLQTAI ADDNASNYEF NNAVESKEKH VPQLHKASAN NTTRQHGSHM 360
  361 LLYDDDNYSS SSDSEQQFIE DSQYNSSDDE EEEDDDDQEV DDNHDEGLSL RRTLSLGKSG 420
  421

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [775-1014]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STNSLYDLAQ PSLSSATPQQ KNPTNFTGGK TDVDKDAQLA VRPYPLKRNS SSGNFIFNSD  60
   61 SEEESSSEEE QRPLPANSQL VNRSVLKGSV TPANISSQKK KALPKQPKAS DSSQSFRIVN 120
  121 NTPSPAEVGA SDVAIEGYFS PRNESIKSVV SGGNMMDHQD HSEMDTLAKG FENCHINNAS 180
  181 KLKDKKVDSV QTTRKEASLT DSSNESLHKV VQNARGMASK YLHSWKKSDV KPQENGNDSS 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits