YRC Public Data Repository - Protein Structure Prediction

Protein:	PSF1
Organism:	Saccharomyces cerevisiae
Length:	208 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSF1.

Description	E-value	Query Range	Subject Range
PSF1 - Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which is localized to DNA replication orig... gi\|207346858 - gi\|207346858\|gb\|EDZ73224.1\| YDR013Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405010 - gi\|190405010\|gb\|EDV08277.1\| subunit of the GINS complex [Saccharomyces cerevisiae RM11-1a] gi\|151942002 - gi\|151942002\|gb\|EDN60358.1\| GINS complex subunit [Saccharomyces cerevisiae YJM789] PSF1_YEAST - DNA replication complex GINS protein PSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	7.0E-73	[1..208]	[1..208]
gi\|157835880, gi... - gi\|63999832\|ref\|NP_066545.2\| DNA replication complex GINS protein PSF1 [Homo sapiens], gi\|157835880\|...	2.0E-68	[1..208]	[1..194]
PSF1_MOUSE - DNA replication complex GINS protein PSF1 OS=Mus musculus GN=Gins1 PE=1 SV=1	1.0E-67	[1..208]	[1..194]
gi\|220958848, gi... - gi\|220958848\|gb\|ACL91967.1\| Psf1-PA [synthetic construct], gi\|220952288\|gb\|ACL88687.1\| Psf1-PA [synt... Psf1-PA - The gene Psf1 is referred to in FlyBase by the symbol Dmel\Psf1 (CG9187, FBgn0035194). It is a prote...	2.0E-61	[1..208]	[7..201]
psf1 (reserved) - GINS complex subunit Psf1 PSF1_SCHPO - DNA replication complex GINS protein psf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	4.0E-58	[3..208]	[6..202]
gi\|25406641, gi\|... - gi\|5902373\|gb\|AAD55475.1\|AC009322_15 Unknown protein [Arabidopsis thaliana], gi\|51969246\|dbj\|BAD4331...	8.0E-54	[1..208]	[1..199]
gi\|19069346, gi\|... - gi\|19074704\|ref\|NP_586210.1\| similarity to HYPOTHETICAL PROTEIN YDI3_yeast [Encephalitozoon cuniculi... gi\|19074704 - gi\|19074704\|ref\|NP_586210.1\| similarity to HYPOTHETICAL PROTEIN YDI3_yeast [Encephalitozoon cuniculi...	3.0E-44	[1..208]	[2..182]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYGDLGNKLV LEAKRTKQLY ARSNQDVNLP MYHEDIIRNI LKEVSNLRKN TEYLKEQQQL  60
   61 GMLDDKVAKC QYFVTLLCME RNKRCLLAYQ RLRTDILDSM AWNNNGLDLM SSITFSQQDT 120
  121 NNLSHQEQEY LKEYCDLITD LKSGDLVDID LSGSLVPPSD VFIDVRVLKD AGEIQTEYGV 180
  181 FNLIKDSQFF VRQSDVERLI QQGYLQKI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	142.958607
Match:	PF03651
Description:	Partner of SLD five, PSF1

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits