| Protein: | WHI4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 649 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WHI4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..649] | [1..649] |
|
|
9.0E-77 | [172..534] | [17..372] |
|
|
2.0E-74 | [173..526] | [104..480] |
|
|
3.0E-69 | [174..533] | [106..447] |
|
|
2.0E-49 | [173..527] | [72..466] |
|
Region A: Residues: [1-326] |
1 11 21 31 41 51
| | | | | |
1 MSLVHNQTNL NESKFLIERA FSSSSETVPL SKEATYPMPT AYSFSAVRSN SETNIKRENP 60
61 QGFAKEPIMT SMLHNLTMST GKGNGNDVNS LAPHDVDVGP YCLLLRNLPK DITLRECYCI 120
121 FSLATGVSSI ELKRDDREPF NDNEKVVVVK FGSLSLVTHY ANILNSKSEI FGPSFPFRSH 180
181 IDVVNEQTQL PVSFQEHVSS GTTNSSPKNY QLSSSAQNEI QNQSFNTISY GKTSSSPLGP 240
241 SAAKPRPSLL SERSLRFSFN DPFGLETISQ RKESVPFLRN SISQHDLSNV TTTPVPAGMP 300
301 PQKDAGKSLL LLEKDEINES IWNGDE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [327-447] |
1 11 21 31 41 51
| | | | | |
1 LVNDVGNSSF GASLQEPPMS STPVMEWNAS STANIPLFQL SSQENHQSNL LPPSHHSISQ 60
61 DVPHIQSQPN LNNSGVIHSA TSLPHYHLLN QINASTKTQS IQQSVSNVPS NLDLNLQTEN 120
121 G
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.80563734517858 | bayes_pls_golite062009 |
| nucleic acid binding | 2.10800250002791 | bayes_pls_golite062009 |
| RNA binding | 1.27892507616795 | bayes_pls_golite062009 |
| protein binding | 1.02232785292059 | bayes_pls_golite062009 |
| mRNA binding | 0.358102192108578 | bayes_pls_golite062009 |
|
Region A: Residues: [448-511] |
1 11 21 31 41 51
| | | | | |
1 HPQSSAPNGS SIFNNQKVNQ GFLVSEQDTS TISRQKECSS TASASAFSKN NETNVAGSTT 60
61 ISQA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.501 | d.58.17 | Metal-binding domain |
| View | Download | 0.427 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.291 | g.59.1 | Zinc-binding domain of translation initiation factor 2 beta |
| View | Download | 0.253 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.246 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.215 | d.129.1 | TATA-box binding protein-like |
| Term | Confidence | Notes |
| binding | 2.80563734517858 | bayes_pls_golite062009 |
| nucleic acid binding | 2.10800250002791 | bayes_pls_golite062009 |
| RNA binding | 1.27892507616795 | bayes_pls_golite062009 |
| protein binding | 1.02232785292059 | bayes_pls_golite062009 |
| mRNA binding | 0.358102192108578 | bayes_pls_golite062009 |
|
Region A: Residues: [512-649] |
1 11 21 31 41 51
| | | | | |
1 DLSLLAKVPP PANPADQNPP CNTLYVGNLP PDATEQELRQ LFSNQQGFRR LSFRNKMNSH 60
61 GHGNGHGHGP ICFVEFEDVS FATRALAELY GSQLPHPRPS LNNKGGIRLS FSKNPLGVRG 120
121 SNSRSKSGYS FNGSYGKS
|
| Detection Method: | |
| Confidence: | 37.232149 |
| Match: | 2u1a__ |
| Description: | Splicesomal U1A protein |
Matching Structure (courtesy of the PDB): |
|
