| Protein: | RRI1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 455 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRI1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..455] | [1..455] |
|
|
1.0E-90 | [25..361] | [9..360] |
|
|
4.0E-83 | [25..361] | [4..351] |
|
|
2.0E-82 | [24..361] | [6..350] |
|
|
2.0E-76 | [27..344] | [3..321] |
|
Region A: Residues: [1-54] |
1 11 21 31 41 51
| | | | | |
1 MNNNDRKSIK TAGGSMSLSN KTVKELRQLL KERYTVEDEL TESIALSSMR FKPS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.534 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.690 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.690 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.682 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.632 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.632 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.605 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.605 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.534 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.491 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.389 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.378 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.357 | a.28.1 | ACP-like |
| View | Download | 0.343 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.342 | a.5.2 | UBA-like |
| View | Download | 0.329 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.324 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.324 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.311 | a.28.1 | ACP-like |
| View | Download | 0.305 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.304 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.293 | a.28.1 | ACP-like |
| View | Download | 0.293 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.284 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.272 | a.28.1 | ACP-like |
| View | Download | 0.262 | a.5.2 | UBA-like |
| View | Download | 0.262 | a.74.1 | Cyclin-like |
| View | Download | 0.254 | a.5.2 | UBA-like |
| View | Download | 0.249 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.247 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.239 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.222 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.220 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.217 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.213 | a.4.7 | Ribosomal protein L11, C-terminal domain |
| View | Download | 0.208 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.206 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.203 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
|
Region A: Residues: [55-216] |
1 11 21 31 41 51
| | | | | |
1 QEPEFHALSQ SSLLKTKLKQ QSSTDIPSYT HVLISKLSCE KITHYAVRGG NIEIMGILMG 60
61 FTLKDNIVVM DCFNLPVVGT ETRVNAQLES YEYMVQYIDE MYNHNDGGDG RDYKGAKLNV 120
121 VGWFHSHPGY DCWLSNIDIQ TQDLNQRFQD PYVAIVVDPL KS
|
| Detection Method: | |
| Confidence: | 44.79588 |
| Match: | PF01398 |
| Description: | Mov34/MPN/PAD-1 family |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [217-368] |
1 11 21 31 41 51
| | | | | |
1 LEDKILRMGA FRTIESKSDD NSATSYYELE TIIFDSELNR ALFETKLNLH CVIEDDESEQ 60
61 ISLNRLIDSM KQYSYLMDSK NVRTRIKLAT TSERVSNENK KNIDYQNRST RSQFCLNTQR 120
121 GDSTETSSFG SMFSGDNTSD VDMEDRNLTE FD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.373 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.308 | N/A | N/A | d.192.1 | YlxR-like |
| View | Download | 0.226 | N/A | N/A | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.219 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.215 | N/A | N/A | a.77.1 | DEATH domain |
|
Region A: Residues: [369-455] |
1 11 21 31 41 51
| | | | | |
1 STDTSLCING EPSIHVNRVE RSSRSTDNFH NSKKRMNSNQ ERCHDEGNDM LQRNVLETDY 60
61 ARAKNRILAS KIKQYERLRF YKDTFTL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.373 | a.77.1 | DEATH domain |
| View | Download | 0.308 | d.192.1 | YlxR-like |
| View | Download | 0.226 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.219 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.202 | a.4.1 | Homeodomain-like |
