| Protein: | NOP6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 225 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP6.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-67 | [1..225] | [1..225] |
|
|
2.0E-58 | [10..225] | [17..233] |
|
|
0.002 | [22..122] | [103..203] |
|
Region A: Residues: [1-225] |
1 11 21 31 41 51
| | | | | |
1 MGSEEDKKLT KKQLKAQQFR KSKEEKDQEK DVKKEQAPEG KRPNSAAGND GEEPVKKKRK 60
61 TRRGRGGKGK NGKKGNRFIV FVGSLPRDIT AVELQNHFKN SSPDQIRLRA DKGIAFLEFD 120
121 ADKDRTGIQR RMDIALLQHG TLLKEKKINV ELTVGGGGNS QERLEKLKNK NIKLDEERKE 180
181 RLTKMINDGN QKKIAKTTAT AAQTSGTDNK PVPAGIHPDR AKLLK
|
| Detection Method: |  |
| Confidence: | 10.13 |
| Match: | 1fj7A |
| Description: | Nucleolin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.32086587430292 | bayes_pls_golite062009 |
| binding | 2.84652855524974 | bayes_pls_golite062009 |
| nucleic acid binding | 2.07488701626356 | bayes_pls_golite062009 |
| 1.23676130179002 | bayes_pls_golite062009 | |
| structural molecule activity | 1.11870738570663 | bayes_pls_golite062009 |
| protein binding | 0.826837409443725 | bayes_pls_golite062009 |
| mRNA binding | 0.132944695780323 | bayes_pls_golite062009 |
