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View Structure Prediction Details

Protein: SNF3
Organism: Saccharomyces cerevisiae
Length: 884 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF3.

Description E-value Query
Range
Subject
Range
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb...
SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...
0.0 [1..884] [1..884]
gi|2440082 - gi|2440082|emb|CAA75114.1| putative glucose sensor [Kluyveromyces lactis]
0.0 [81..773] [2..713]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [49..586] [17..564]

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Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPNSNSSSE TLRQEKQGFL DKALQRVKGI ALRRNNSNKD HTTDDTTGSI RTPTSLQRQN  60
   61 SDRQSNMTSV FTDDISTIDD NSILFS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [87-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPPQKQSMMM SICVGVFVAV GGFLFGYDTG LINSITSMNY VKSHVAPNHD SFTAQQMSIL  60
   61 VSFLSLGTFF GALTAPFISD SYGRKPTIIF STIFIFSIGN SLQVGAGGIT LLIVGRVISG 120
  121 IGIGAISAVV PLYQAEATHK SLRGAIISTY QWAITWGLLV SSAVSQGTHA RNDASSYRIP 180
  181 IGLQYVWSSF LAIGMFFLP

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [334-545]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGSSNFIDCF ISSKSRPKQT LRMFTGIALQ AFQQFSGINF IFYYGVNFFN KTGVSNSYLV  60
   61 SFITYAVNVV FNVPGLFFVE FFGRRKVLVV GGVIMTIANF IVAIVGCSLK TVAAAKVMIA 120
  121 FICLFIAAFS ATWGGVVWVI SAELYPLGVR SKCTAICAAA NWLVNFICAL ITPYIVDTGS 180
  181 HTSSLGAKIF FIWGSLNAMG VIVVYLTVYE TK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 506.0
Match: 1ja5A_
Description: No description for 1ja5A_ was found.

Predicted functions:

Term Confidence Notes
glycerol transmembrane transporter activity 7.11654923455995 bayes_pls_golite062009
alcohol transmembrane transporter activity 6.7545566917184 bayes_pls_golite062009
polyol transmembrane transporter activity 6.7545566917184 bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity 5.74077413704789 bayes_pls_golite062009
transporter activity 4.09176719149278 bayes_pls_golite062009
substrate-specific transporter activity 3.59744164024479 bayes_pls_golite062009
transmembrane transporter activity 3.5865018981083 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 3.54194478414824 bayes_pls_golite062009
hexose phosphate transmembrane transporter activity 3.29248638217469 bayes_pls_golite062009
glucose-6-phosphate transmembrane transporter activity 3.29248638217469 bayes_pls_golite062009
sugar:hydrogen symporter activity 2.99050613058546 bayes_pls_golite062009
cation:sugar symporter activity 2.99050613058546 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 2.62141276633776 bayes_pls_golite062009
sugar transmembrane transporter activity 2.47557586092261 bayes_pls_golite062009
ion transmembrane transporter activity 2.21266150105753 bayes_pls_golite062009
solute:hydrogen symporter activity 2.10485633822652 bayes_pls_golite062009
binding 1.89539096965643 bayes_pls_golite062009
cation transmembrane transporter activity 1.79369588808394 bayes_pls_golite062009
monosaccharide transmembrane transporter activity 1.6904339767429 bayes_pls_golite062009
active transmembrane transporter activity 1.59419818573076 bayes_pls_golite062009
secondary active transmembrane transporter activity 1.22264637452409 bayes_pls_golite062009
symporter activity 0.74591237387473 bayes_pls_golite062009
solute:cation symporter activity 0.74591237387473 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [286-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESPRYYVLKD KLDEAAKSLS FLRGVPVHDS GLLEELVEIK ATYDYEAS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [546-617]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLTLEEIDEL YIKSSTGVVS PKFNKDIRER ALKFQYDPLQ RLEDGKNTFV AKRNNFDDET  60
   61 PRNDFRNTIS GE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 506.0
Match: 1ja5A_
Description: No description for 1ja5A_ was found.

Predicted Domain #4
Region A:
Residues: [618-884]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDHSPNQKEV HSIPERVDIP TSTEILESPN KSSGMTVPVS PSLQDVPIPQ TTEPAEIRTK  60
   61 YVDLGNGLGL NTYNRGPPSL SSDSSEDYTE DEIGGPSSQG DQSNRSTMND INDYMARLIH 120
  121 STSTASNTTD KFSGNQSTLR YHTASSHSDT TEEDSNLMDL GNGLALNAYN RGPPSILMNS 180
  181 SDEEANGGET SDNLNTAQDL AGMKERMAQF AQSYIDKRGG LEPETQSNIL STSLSVMADT 240
  241 NEHNNEILHS SEENATNQPV NENNDLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle