| Protein: | SNF3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 884 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..884] | [1..884] |
|
|
0.0 | [81..773] | [2..713] |
|
|
0.0 | [49..586] | [17..564] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MDPNSNSSSE TLRQEKQGFL DKALQRVKGI ALRRNNSNKD HTTDDTTGSI RTPTSLQRQN 60
61 SDRQSNMTSV FTDDISTIDD NSILFS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.365 | c.47.1 | Thioredoxin-like |
| View | Download | 0.275 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.289 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.307 | a.130.1 | Chorismate mutase II |
| View | Download | 0.348 | c.44.2 | Enzyme IIB-cellobiose |
| View | Download | 0.365 | c.47.1 | Thioredoxin-like |
| View | Download | 0.348 | c.44.2 | Enzyme IIB-cellobiose |
| View | Download | 0.307 | a.130.1 | Chorismate mutase II |
| View | Download | 0.289 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.275 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.247 | c.47.1 | Thioredoxin-like |
| View | Download | 0.222 | a.39.1 | EF-hand |
| View | Download | 0.213 | a.74.1 | Cyclin-like |
|
Region A: Residues: [87-285] |
1 11 21 31 41 51
| | | | | |
1 EPPQKQSMMM SICVGVFVAV GGFLFGYDTG LINSITSMNY VKSHVAPNHD SFTAQQMSIL 60
61 VSFLSLGTFF GALTAPFISD SYGRKPTIIF STIFIFSIGN SLQVGAGGIT LLIVGRVISG 120
121 IGIGAISAVV PLYQAEATHK SLRGAIISTY QWAITWGLLV SSAVSQGTHA RNDASSYRIP 180
181 IGLQYVWSSF LAIGMFFLP
|
|
Region B: Residues: [334-545] |
1 11 21 31 41 51
| | | | | |
1 FGSSNFIDCF ISSKSRPKQT LRMFTGIALQ AFQQFSGINF IFYYGVNFFN KTGVSNSYLV 60
61 SFITYAVNVV FNVPGLFFVE FFGRRKVLVV GGVIMTIANF IVAIVGCSLK TVAAAKVMIA 120
121 FICLFIAAFS ATWGGVVWVI SAELYPLGVR SKCTAICAAA NWLVNFICAL ITPYIVDTGS 180
181 HTSSLGAKIF FIWGSLNAMG VIVVYLTVYE TK
|
| Detection Method: | |
| Confidence: | 506.0 |
| Match: | 1ja5A_ |
| Description: | No description for 1ja5A_ was found. |
| Term | Confidence | Notes |
| glycerol transmembrane transporter activity | 7.11654923455995 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 6.7545566917184 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 6.7545566917184 | bayes_pls_golite062009 |
| glycerol-3-phosphate transmembrane transporter activity | 5.74077413704789 | bayes_pls_golite062009 |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.54194478414824 | bayes_pls_golite062009 |
| hexose phosphate transmembrane transporter activity | 3.29248638217469 | bayes_pls_golite062009 |
| glucose-6-phosphate transmembrane transporter activity | 3.29248638217469 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 2.99050613058546 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 2.99050613058546 | bayes_pls_golite062009 |
| carbohydrate transmembrane transporter activity | 2.62141276633776 | bayes_pls_golite062009 |
| sugar transmembrane transporter activity | 2.47557586092261 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.21266150105753 | bayes_pls_golite062009 |
| solute:hydrogen symporter activity | 2.10485633822652 | bayes_pls_golite062009 |
| binding | 1.89539096965643 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.79369588808394 | bayes_pls_golite062009 |
| monosaccharide transmembrane transporter activity | 1.6904339767429 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
|
Region A: Residues: [286-333] |
1 11 21 31 41 51
| | | | | |
1 ESPRYYVLKD KLDEAAKSLS FLRGVPVHDS GLLEELVEIK ATYDYEAS
|
|
Region B: Residues: [546-617] |
1 11 21 31 41 51
| | | | | |
1 GLTLEEIDEL YIKSSTGVVS PKFNKDIRER ALKFQYDPLQ RLEDGKNTFV AKRNNFDDET 60
61 PRNDFRNTIS GE
|
| Detection Method: | |
| Confidence: | 506.0 |
| Match: | 1ja5A_ |
| Description: | No description for 1ja5A_ was found. |
|
Region A: Residues: [618-884] |
1 11 21 31 41 51
| | | | | |
1 IDHSPNQKEV HSIPERVDIP TSTEILESPN KSSGMTVPVS PSLQDVPIPQ TTEPAEIRTK 60
61 YVDLGNGLGL NTYNRGPPSL SSDSSEDYTE DEIGGPSSQG DQSNRSTMND INDYMARLIH 120
121 STSTASNTTD KFSGNQSTLR YHTASSHSDT TEEDSNLMDL GNGLALNAYN RGPPSILMNS 180
181 SDEEANGGET SDNLNTAQDL AGMKERMAQF AQSYIDKRGG LEPETQSNIL STSLSVMADT 240
241 NEHNNEILHS SEENATNQPV NENNDLK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
