| Protein: | UFD2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 961 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UFD2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..961] | [1..961] |
|
|
0.0 | [8..961] | [89..1010] |
|
|
0.0 | [8..961] | [10..931] |
|
|
0.0 | [49..954] | [290..1171] |
|
|
0.0 | [49..954] | [290..1171] |
|
Region A: Residues: [1-196] |
1 11 21 31 41 51
| | | | | |
1 MTAIEDILQI TTDPSDTRGY SLLKSEEVPQ GSTLGVDFID TLLLYQLTEN EKLDKPFEYL 60
61 NDCFRRNQQQ KRITKNKPNA ESLHSTFQEI DRLVIGYGVV ASQIENFCMN GAFINYITGI 120
121 VSNVNSYTDF LSQIIQRAIL EGTALDLLNA VFPTLLEYCN KHVSHFDLNE SVIYNNVLTI 180
181 FELFVTFKPI AEIFTK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [197-669] |
1 11 21 31 41 51
| | | | | |
1 IDGFFADYSC KPQDFERKTI LGPILSLSPI EAAVAIRNYG DNLLRSKQQT AMIHESLQAE 60
61 HKVVIDRLFF IVDKLVRGSL NSRTDMISYF AHIANKNHLR RADHPPFKEL SSNGFMSNIT 120
121 LLLVRFSQPF LDISYKKIDK IDANYFNNPS LFIDLSGETR LNSDFKEADA FYDKNRKTAD 180
181 SKPNFISDCF FLTLTYLHYG LGGTLSFEEK MGSEIKALKE EIEKVKKIAA NHDVFARFIT 240
241 AQLSKMEKAL KTTESLRFAL QGFFAHRSLQ LEVFDFICGA STFLIRVVDP EHEFPFKQIK 300
301 LPLIPDQIGV ENVDNADFLR AHAPVPFKYY PEFVVEGPVN YSLYISKYQT SPIFRNPRLG 360
361 SFVEFTTMVL RCPELVSNPH LKGKLVQLLS VGAMPLTDNS PGFMMDIFEH DELVNKNLLY 420
421 ALLDFYVIVE KTGSSSQFYD KFNSRYSISI ILEELYYKIP SYKNQLIWQS QNN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [670-886] |
1 11 21 31 41 51
| | | | | |
1 ADFFVRFDAR MLNDLTFLLD EGLSNLAEVH NIQNELDNRA RGAPPTREEE DKELQTRLAS 60
61 ASRQAKSSCG LADKSMKLFE IYSKDIPAAF VTPEIVYRLA SMLNYNLESL VGPKCGELKV 120
121 KDPQSYSFNP KDLLKALTTV YINLSEQSEF ISAVAKDERS FNRNLFVRAV DILGRKTGLA 180
181 SPEFIEKLLN FANKAEEQRK ADEEEDLEYG DVPDEFL
|
| Detection Method: | |
| Confidence: | 2.221849 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [887-961] |
1 11 21 31 41 51
| | | | | |
1 DPLMYTIMKD PVILPASKMN IDRSTIKAHL LSDSTDPFNR MPLKLEDVTP NEELRQKILC 60
61 FKKQKKEEAK HKASE
|
| Detection Method: | |
| Confidence: | 3.39794 |
| Match: | 1jm7B_ |
| Description: | bard1 RING domain |
Matching Structure (courtesy of the PDB): |
|
