YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL183C
Organism:	Saccharomyces cerevisiae
Length:	320 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL183C.

Description	E-value	Query Range	Subject Range
YDL183C - Mitochondrial inner-membrane protein thought to be involved in the formation of an active mitochondr... YD183_YEAST - Uncharacterized protein YDL183C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDL183C ...	0.0	[1..320]	[1..320]
SPAC23H3.12c - conserved protein (fungal and plant) YEPC_SCHPO - Uncharacterized protein C23H3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23H3...	1.0E-65	[42..252]	[1..179]
gi\|110741179, gi... - gi\|62321744\|dbj\|BAD95368.1\| hypothetical protein [Arabidopsis thaliana], gi\|15220931\|ref\|NP_175779.1...	3.0E-55	[85..243]	[40..194]
gi\|19577360 - gi\|19577360\|emb\|CAD28441.1\| hypothetical protein [Aspergillus fumigatus]	2.0E-50	[42..210]	[1..145]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSIFIPPT SITATSRLFY GMRAYSTKLE KASLQKYLHD PVKVTVIPIT DKESFIYYKH  60
   61 TDNLFNSQSR ILKAEKWIVE KSAKLWRKLK KSPKSYNKKI VSMVQSLLNS TPWSENSLLT 120
  121 IPSESYILKR IKGEKDKTQE IRLTLKDYTV KAEQVDTQPL HVYYPPGISS PDECLRQMKK 180
  181 LYQEGLIYHK KWTLYCLLGL PLTIPLILIP LIPNVPGFYL SYRAYVNIKA YLGAKHLKSL 240
  241 LESSKQNLEF RELLGYTEVY KRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [264-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSSRTQGNQK ESKGAPELLL NKKTLPLILD FLEVHELESD LNKVILQESK SQEKNKI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits