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View Structure Prediction Details

Protein: YDL183C
Organism: Saccharomyces cerevisiae
Length: 320 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL183C.

Description E-value Query
Range
Subject
Range
YDL183C - Mitochondrial inner-membrane protein thought to be involved in the formation of an active mitochondr...
YD183_YEAST - Uncharacterized protein YDL183C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDL183C ...
0.0 [1..320] [1..320]
SPAC23H3.12c - conserved protein (fungal and plant)
YEPC_SCHPO - Uncharacterized protein C23H3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23H3...
1.0E-65 [42..252] [1..179]
gi|110741179, gi... - gi|62321744|dbj|BAD95368.1| hypothetical protein [Arabidopsis thaliana], gi|15220931|ref|NP_175779.1...
3.0E-55 [85..243] [40..194]
gi|19577360 - gi|19577360|emb|CAD28441.1| hypothetical protein [Aspergillus fumigatus]
2.0E-50 [42..210] [1..145]

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Predicted Domain #1
Region A:
Residues: [1-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSIFIPPT SITATSRLFY GMRAYSTKLE KASLQKYLHD PVKVTVIPIT DKESFIYYKH  60
   61 TDNLFNSQSR ILKAEKWIVE KSAKLWRKLK KSPKSYNKKI VSMVQSLLNS TPWSENSLLT 120
  121 IPSESYILKR IKGEKDKTQE IRLTLKDYTV KAEQVDTQPL HVYYPPGISS PDECLRQMKK 180
  181 LYQEGLIYHK KWTLYCLLGL PLTIPLILIP LIPNVPGFYL SYRAYVNIKA YLGAKHLKSL 240
  241 LESSKQNLEF RELLGYTEVY KRG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [264-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSSRTQGNQK ESKGAPELLL NKKTLPLILD FLEVHELESD LNKVILQESK SQEKNKI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.415 a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.415 a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.406 a.4.1 Homeodomain-like
View Download 0.406 a.4.1 Homeodomain-like
View Download 0.364 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.364 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.343 a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.311 a.164.1 C-terminal domain of DFF45/ICAD (DFF-C domain)
View Download 0.311 a.164.1 C-terminal domain of DFF45/ICAD (DFF-C domain)
View Download 0.289 a.4.1 Homeodomain-like
View Download 0.279 a.77.1 DEATH domain
View Download 0.267 a.108.1 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
View Download 0.266 a.138.1 Multiheme cytochromes
View Download 0.261 a.37.1 A DNA-binding domain in eukaryotic transcription factors
View Download 0.255 a.4.1 Homeodomain-like
View Download 0.233 a.64.2 Bacteriocin AS-48
View Download 0.223 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.220 a.4.5 "Winged helix" DNA-binding domain
View Download 0.218 a.4.1 Homeodomain-like
View Download 0.217 a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle