YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL177C
Organism:	Saccharomyces cerevisiae
Length:	170 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL177C.

Description	E-value	Query Range	Subject Range
YDL177C - Putative protein of unknown function; similar to the mouse IMPACT gene; YDL177C is not an essential ... YD177_YEAST - IMPACT family member YDL177C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDL177C PE=...	3.0E-55	[1..170]	[1..170]
gi\|16801721 - gi\|16801721\|ref\|NP_471989.1\| hypothetical protein lin2660 [Listeria innocua Clip11262] gi\|25303440, gi\|... - pir\|\|AF1764 conserved hypothetical protein homolog lin2660 [imported] - Listeria innocua (strain Cli...	4.0E-40	[45..167]	[1..128]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-40	[45..167]	[1..128]
YVYE_BACSU - IMPACT family member yvyE OS=Bacillus subtilis GN=yvyE PE=3 SV=2 gi\|221315829 - gi\|221315829\|ref\|ZP_03597634.1\| hypothetical protein BsubsN3_19122 [Bacillus subtilis subsp. subtili... gi\|221320744 - gi\|221320744\|ref\|ZP_03602038.1\| hypothetical protein BsubsJ_19085 [Bacillus subtilis subsp. subtilis... YVYE_BACSU - IMPACT family member YvyE OS=Bacillus subtilis (strain 168) GN=yvyE PE=3 SV=2 gi\|221325029 - gi\|221325029\|ref\|ZP_03606323.1\| hypothetical protein BsubsS_19241 [Bacillus subtilis subsp. subtilis...	2.0E-39	[45..167]	[1..128]
gi\|224503243 - gi\|224503243\|ref\|ZP_03671550.1\| hypothetical protein LmonFR_12133 [Listeria monocytogenes FSL R2-561... gi\|25303439, gi\|... - pir\|\|AD1389 conserved hypothetical proteins homolog lmo2516 [imported] - Listeria monocytogenes (str... gi\|16804554 - gi\|16804554\|ref\|NP_466039.1\| hypothetical protein lmo2516 [Listeria monocytogenes EGD-e]	4.0E-39	[45..167]	[1..128]
gi\|25303432 - pir\|\|F84103 hypothetical protein BH3630 [imported] - Bacillus halodurans (strain C-125) gi\|10176254, gi\|... - gi\|15616192\|ref\|NP_244497.1\| hypothetical protein BH3630 [Bacillus halodurans C-125], gi\|10176254\|db...	7.0E-39	[45..167]	[1..128]
gi\|4996357 - gi\|4996357\|dbj\|BAA78421.1\| unnamed protein product [Xenopus borealis]	8.0E-39	[16..169]	[171..289]
gi\|116515439, gi... - gi\|116515439\|ref\|YP_817421.1\| hypothetical protein SPD_2036 [Streptococcus pneumoniae D39], gi\|11607... gi\|15459719, gi\|... - gi\|15904055\|ref\|NP_359605.1\| hypothetical protein spr2014 [Streptococcus pneumoniae R6], gi\|15459719... gi\|25303437 - pir\|\|C98123 conserved hypothetical protein spr2014 [imported] - Streptococcus pneumoniae (strain R6) gi\|147923289, gi... - gi\|148984512\|ref\|ZP_01817800.1\| hypothetical protein CGSSp3BS71_10673 [Streptococcus pneumoniae SP3-... gi\|221232910, gi... - gi\|221232910\|ref\|YP_002512064.1\| hypothetical protein SPN23F_22420 [Streptococcus pneumoniae ATCC 70... gi\|225857778, gi... - gi\|225857778\|ref\|YP_002739289.1\| hypothetical protein SPP_2262 [Streptococcus pneumoniae P1031], gi\|... gi\|168494030, gi... - gi\|183575911\|gb\|EDT96439.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06], gi... gi\|194397335, gi... - gi\|194397335\|ref\|YP_002038805.1\| conserved hypothetical protein [Streptococcus pneumoniae G54], gi\|1... gi\|183569909, gi... - gi\|183569909\|gb\|EDT90437.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00], gi... gi\|183574018, gi... - gi\|183574018\|gb\|EDT94546.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04], gi... gi\|172042422, gi... - gi\|172042422\|gb\|EDT50468.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00], gi... gi\|147930806, gi... - gi\|149020128\|ref\|ZP_01835102.1\| hypothetical protein CGSSp23BS72_08834 [Streptococcus pneumoniae SP2... gi\|149007747, gi... - gi\|149007747\|ref\|ZP_01831356.1\| hypothetical protein CGSSp18BS74_00225 [Streptococcus pneumoniae SP1...	2.0E-38	[47..167]	[1..126]
gi\|11494012 - gi\|11494012\|gb\|AAG35736.1\|AF208694_1 IMPACT [Homo sapiens]	2.0E-38	[17..168]	[178..294]
gi\|14973721, gi\|... - gi\|66878383\|ref\|ZP_00403866.1\| COG1739: Uncharacterized conserved protein [Streptococcus pneumoniae ... gi\|25303433 - pir\|\|C95258 conserved hypothetical protein SP2209 [imported] - Streptococcus pneumoniae (strain TIGR...	2.0E-38	[47..167]	[1..126]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNVGKLVK IWNESEVLVD RKSKFQARCC PLQNQKDIPS ILQELTQNNK SVSKASHMHM  60
   61 YAWRTAEVSN NLHLQQEQKK KGNKANKSNN SHVNKSRNIT VQPKNIEQGC ADCGEAGAGQ 120
  121 RLLTLLERAN IFNVLVIVTR WYGGTPLGSS RFRHISTCAV ETLKKGGFLP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.744727
Match:	PF01205
Description:	Uncharacterized protein family UPF0029

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [58-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHMYAWRTAE VSNNLHLQQE QKKKGNKANK SNNSHVNKSR NITVQPKNIE QGCADCGEAG  60
   61 AGQRLLTLLE RANIFNVLVI VTRWYGGTPL GSSRFRHIST CAVETLKKGG FLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2cveA
Description:	Crystal structure of a conserved hypothetical protein TT1547 from thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.112026646106867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: