YRC Public Data Repository - Protein Structure Prediction

Protein:	CRD1
Organism:	Saccharomyces cerevisiae
Length:	283 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRD1.

Description	E-value	Query Range	Subject Range
CRD1 - Cardiolipin synthase; produces cardiolipin, which is a phospholipid of the mitochondrial inner membr... CRD1_YEAST - Cardiolipin synthase (CMP-forming) OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRD1 ...	3.0E-56	[1..283]	[1..283]
CCDS830.1_1 - null CEPT1 - choline/ethanolamine phosphotransferase 1 gi\|114558962, gi... - gi\|114558966\|ref\|XP_001161701.1\| PREDICTED: choline/ethanolaminephosphotransferase isoform 7 [Pan tr...	5.0E-29	[55..270]	[62..303]
DIPPS_AQUAE - Bifunctional IPC transferase and DIPP synthase OS=Aquifex aeolicus (strain VF5) GN=spsI PE=1 SV=1 gi\|7429848 - pir\|\|H70418 glucose-1-phosphate thymidylyltransferase - Aquifex aeolicus	6.0E-27	[40..225]	[231..422]
gi\|5458457, gi\|7... - pir\|\|D75080 glucose-1-phosphate thymidylyltransferase related protein PAB2433 - Pyrococcus abyssi (s... gi\|5458457, gi\|1... - gi\|5458457\|emb\|CAB49945.1\| CDP-alcohol phosphatidyltransferase [Pyrococcus abyssi GE5], gi\|14521239\|...	1.0E-26	[40..223]	[225..414]
DIPPS_PYRFU - Bifunctional IPC transferase and DIPP synthase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 ...	1.0E-26	[40..225]	[234..425]
gi\|7429847 - pir\|\|E71065 hypothetical protein PH1219 - Pyrococcus horikoshii gi\|14591039, gi\|... - gi\|3257636\|dbj\|BAA30319.1\| 423aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591039\|...	2.0E-26	[40..223]	[225..414]
CLS_ARATH - Cardiolipin synthase (CMP-forming), mitochondrial OS=Arabidopsis thaliana GN=CLS PE=1 SV=1	3.0E-25	[32..276]	[102..333]
PSS_MYCLE - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium leprae GN=pssA PE=3 SV=1 PSS_MYCLE - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium leprae (strain TN) GN=pssA PE=... gi\|221229555, gi... - gi\|221229555\|ref\|YP_002502971.1\| putative CDP-diacylglycerol-serine o-phosphatidyltransferase [Mycob...	1.0E-24	[57..281]	[3..221]
gi\|25288732, gi\|... - pir\|\|AG2715 phosphatidylglycerophosphate synthase pgsA [imported] - Agrobacterium tumefaciens (strai... gi\|17739526, gi\|... - gi\|17935035\|ref\|NP_531825.1\| phosphatidylglycerophosphate synthase [Agrobacterium tumefaciens str. C...	2.0E-24	[65..280]	[3..191]

Back

Predicted Domain #1

Region A:
Residues: [1-58]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQMVPIYSC SALLRRTIPK RPFYHVLSGL TVRFKVNPQL NYNLFRDLTR REYATNPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [59-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTPHIKSKLL NIPNILTLSR IGCTPFIGLF IITNNLTPAL GLFAFSSITD FMDGYIARKY  60
   61 GLKTIAGTIL DPLADKLLMI TTTLALSVPS GPQIIPVSIA AIILGRDVLL AISALFIRYS 120
  121 TLKLKYPGRV AWNSYWDIVR YPSAEVRPSQ LSKWNTFFQM VYLGSGVLLL LYEKEEGCEK 180
  181 TEEDFEDRKQ DFQKAFSYLG YVTATTTIMS GVSYALKRNA FKLLK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.585027
Match:	PF01066
Description:	CDP-alcohol phosphatidyltransferase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits