| Protein: | CRD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 283 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRD1.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-56 | [1..283] | [1..283] |
|
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5.0E-29 | [55..270] | [62..303] |
|
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6.0E-27 | [40..225] | [231..422] |
|
|
1.0E-26 | [40..223] | [225..414] |
|
|
1.0E-26 | [40..225] | [234..425] |
|
|
2.0E-26 | [40..223] | [225..414] |
|
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3.0E-25 | [32..276] | [102..333] |
|
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1.0E-24 | [57..281] | [3..221] |
|
|
2.0E-24 | [65..280] | [3..191] |
|
Region A: Residues: [1-58] |
1 11 21 31 41 51
| | | | | |
1 MIQMVPIYSC SALLRRTIPK RPFYHVLSGL TVRFKVNPQL NYNLFRDLTR REYATNPS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.694 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.677 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.647 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.695 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.695 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.694 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.677 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.661 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.661 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.647 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.624 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.606 | a.4.1 | Homeodomain-like |
| View | Download | 0.555 | a.4.1 | Homeodomain-like |
| View | Download | 0.546 | a.4.1 | Homeodomain-like |
| View | Download | 0.524 | a.4.1 | Homeodomain-like |
| View | Download | 0.500 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.486 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.454 | a.5.2 | UBA-like |
| View | Download | 0.450 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.423 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.392 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.385 | a.65.1 | Annexin |
| View | Download | 0.381 | a.112.1 | Description not found. |
| View | Download | 0.372 | a.4.1 | Homeodomain-like |
| View | Download | 0.344 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.315 | a.4.10 | N-terminal Zn binding domain of HIV integrase |
| View | Download | 0.312 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.286 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.278 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.273 | a.4.1 | Homeodomain-like |
| View | Download | 0.266 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.264 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.249 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.244 | a.39.1 | EF-hand |
| View | Download | 0.240 | a.64.1 | Saposin |
| View | Download | 0.230 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.229 | a.22.1 | Histone-fold |
| View | Download | 0.226 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.213 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.209 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.202 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.201 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.201 | g.1.1 | Insulin-like |
| View | Download | 0.201 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
|
Region A: Residues: [59-283] |
1 11 21 31 41 51
| | | | | |
1 KTPHIKSKLL NIPNILTLSR IGCTPFIGLF IITNNLTPAL GLFAFSSITD FMDGYIARKY 60
61 GLKTIAGTIL DPLADKLLMI TTTLALSVPS GPQIIPVSIA AIILGRDVLL AISALFIRYS 120
121 TLKLKYPGRV AWNSYWDIVR YPSAEVRPSQ LSKWNTFFQM VYLGSGVLLL LYEKEEGCEK 180
181 TEEDFEDRKQ DFQKAFSYLG YVTATTTIMS GVSYALKRNA FKLLK
|
| Detection Method: | |
| Confidence: | 28.585027 |
| Match: | PF01066 |
| Description: | CDP-alcohol phosphatidyltransferase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
