YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NUP84
Organism: Saccharomyces cerevisiae
Length: 726 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP84.

Description E-value Query
Range
Subject
Range
NUP84 - Subunit of the nuclear pore complex (NPC), forms a subcomplex with Nup85p, Nup120p, Nup145p-C, Sec13...
NUP84_YEAST - Nucleoporin NUP84 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP84 PE=1 SV=1
0.0 [1..726] [1..726]
NUP107 - nucleoporin 107kDa
0.0 [15..718] [155..904]
gi|13435556 - gi|13435556|gb|AAH04655.1| Nup107 protein [Mus musculus]
0.0 [15..718] [12..761]
NU107_RAT - Nuclear pore complex protein Nup107 OS=Rattus norvegicus GN=Nup107 PE=1 SV=1
0.0 [15..718] [155..905]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [67..725] [89..768]
NU107_SCHPO - Nucleoporin nup107 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup107 PE=1 SV=3
nup107 - nucleoporin Nup107
0.0 [246..725] [1..490]
gi|9294637 - gi|9294637|dbj|BAB02976.1| unnamed protein product [Arabidopsis thaliana]
9.0E-98 [124..451] [292..673]

Back

Predicted Domain #1
Region A:
Residues: [1-56]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSPTYQTE RFTKFSDTLK EFKIEQNNEQ NPIDPFNIIR EFRSAAGQLA LDLANS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [57-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDESNVISSK DWELEARFWH LVELLLVFRN ADLDLDEMEL HPYNSRGLFE KKLMQDNKQL  60
   61 YQIWIVMVWL KENTYVMERP KNVPTSKWLN SITSGGLKSC DLDFPLRENT NVLDVKDKEE 120
  121 DHIFFKYIYE LILAGAIDEA LEEAKLSDNI SICMILCGIQ EYLNPVIDTQ IANEFNTQQG 180
  181 IKKHSLWRRT VYSLSQQAGL DPYERAIYSY LSGAIPNQEV LQYSDWESDL HIHLNQILQT 240
  241 EIENYLLENN QVGTDELILP LPSHALTVQE VLNRVASRHP SESEHPIRVL MASVILDSLP 300
  301 SVIHSSVEML LDVVKGTEAS NDIIDKPYLL RIVTHLAICL DIINPGSVEE VDKSKLITTY 360
  361 ISLLKLQGLY ENIPIYATFL NESDCLEACS FILSSLEDPQ VRKKQIETIN FLRLPASNIL 420
  421 RRTTQRVFDE TEQEYSPSNE ISISF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [502-726]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVNNIDMHLI YGVEWLIEGK LYVDAVHSII ALSRRFLLNG RVKALEQFME RNNIGEICKN  60
   61 YELEKIADNI SKDENEDQFL EEITQYEHLI KGIREYEEWQ KSVSLLSSES NIPTLIEKLQ 120
  121 GFSKDTFELI KTFLVDLTSS NFADSADYEI LYEIRALYTP FLLMELHKKL VEAAKLLKIP 180
  181 KFISEALAFT SLVANENDKI YLLFQSSGKL KEYLDLVART ATLSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle