| Protein: | NUP84 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 726 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP84.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..726] | [1..726] |
|
|
0.0 | [15..718] | [155..904] |
|
|
0.0 | [15..718] | [12..761] |
|
|
0.0 | [15..718] | [155..905] |
|
|
0.0 | [67..725] | [89..768] |
|
|
0.0 | [246..725] | [1..490] |
|
|
9.0E-98 | [124..451] | [292..673] |
|
Region A: Residues: [1-56] |
1 11 21 31 41 51
| | | | | |
1 MELSPTYQTE RFTKFSDTLK EFKIEQNNEQ NPIDPFNIIR EFRSAAGQLA LDLANS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.400 | a.4.1 | Homeodomain-like |
| View | Download | 0.572 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.450 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.484 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.411 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.372 | a.2.7 | tRNA-binding arm |
| View | Download | 0.349 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.325 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.267 | a.140.2 | SAP domain |
| View | Download | 0.244 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.239 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.236 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.234 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.223 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.222 | a.21.1 | HMG-box |
| View | Download | 0.219 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.205 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.204 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.204 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.203 | a.22.1 | Histone-fold |
|
Region A: Residues: [57-501] |
1 11 21 31 41 51
| | | | | |
1 GDESNVISSK DWELEARFWH LVELLLVFRN ADLDLDEMEL HPYNSRGLFE KKLMQDNKQL 60
61 YQIWIVMVWL KENTYVMERP KNVPTSKWLN SITSGGLKSC DLDFPLRENT NVLDVKDKEE 120
121 DHIFFKYIYE LILAGAIDEA LEEAKLSDNI SICMILCGIQ EYLNPVIDTQ IANEFNTQQG 180
181 IKKHSLWRRT VYSLSQQAGL DPYERAIYSY LSGAIPNQEV LQYSDWESDL HIHLNQILQT 240
241 EIENYLLENN QVGTDELILP LPSHALTVQE VLNRVASRHP SESEHPIRVL MASVILDSLP 300
301 SVIHSSVEML LDVVKGTEAS NDIIDKPYLL RIVTHLAICL DIINPGSVEE VDKSKLITTY 360
361 ISLLKLQGLY ENIPIYATFL NESDCLEACS FILSSLEDPQ VRKKQIETIN FLRLPASNIL 420
421 RRTTQRVFDE TEQEYSPSNE ISISF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [502-726] |
1 11 21 31 41 51
| | | | | |
1 DVNNIDMHLI YGVEWLIEGK LYVDAVHSII ALSRRFLLNG RVKALEQFME RNNIGEICKN 60
61 YELEKIADNI SKDENEDQFL EEITQYEHLI KGIREYEEWQ KSVSLLSSES NIPTLIEKLQ 120
121 GFSKDTFELI KTFLVDLTSS NFADSADYEI LYEIRALYTP FLLMELHKKL VEAAKLLKIP 180
181 KFISEALAFT SLVANENDKI YLLFQSSGKL KEYLDLVART ATLSN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
