| Protein: | POL3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1097 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POL3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1097] | [1..1093] |
|
|
0.0 | [45..1097] | [13..1097] |
|
|
0.0 | [45..1097] | [13..1095] |
|
|
0.0 | [69..1097] | [49..1098] |
|
|
0.0 | [45..1097] | [13..1095] |
|
|
0.0 | [69..1097] | [49..1099] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MSEKRSLPMV DVKIDDEDTP QLEKKIKRQS IDHGVGSEPV STIEIIPSDS FRKYNSQGFK 60
61 AKDTDLMGTQ LESTF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [76-157] |
1 11 21 31 41 51
| | | | | |
1 EQDVSQMEHD MADQEEHDLS SFERKKLPTD FDPSLYDISF QQIDAEQSVL NGIKDENTST 60
61 VVRFFGVTSE GHSVLCNVTG FK
|
|
Region B: Residues: [251-578] |
1 11 21 31 41 51
| | | | | |
1 NIAYTLRLMV DCGIVGMSWI TLPKGKYSMI EPNNRVSSCQ LEVSINYRNL IAHPAEGDWS 60
61 HTAPLRIMSF DIECAGRIGV FPEPEYDPVI QIANVVSIAG AKKPFIRNVF TLNTCSPITG 120
121 SMIFSHATEE EMLSNWRNFI IKVDPDVIIG YNTTNFDIPY LLNRAKALKV NDFPYFGRLK 180
181 TVKQEIKESV FSSKAYGTRE TKNVNIDGRL QLDLLQFIQR EYKLRSYTLN AVSAHFLGEQ 240
241 KEDVHYSIIS DLQNGDSETR RRLAVYCLKD AYLPLRLMEK LMALVNYTEM ARVTGVPFSY 300
301 LLARGQQIKV VSQLFRKCLE IDTVIPNM
|
| Detection Method: | |
| Confidence: | 1532.218487 |
| Match: | 1tgoA_ |
| Description: | Exonuclease domain of family B (archaeal and phage) DNA polymerases; T4-like DNA polymerase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [158-250] |
1 11 21 31 41 51
| | | | | |
1 NYLYVPAPNS SDANDQEQIN KFVHYLNETF DHAIDSIEVV SKQSIWGYSG DTKLPFWKIY 60
61 VTYPHMVNKL RTAFERGHLS FNSWFSNGTT TYD
|
|
Region B: Residues: [579-589] |
1 11 21 31 41 51
| | | | | |
1 QSQASDDQYE G
|
|
Region C: Residues: [611-731] |
1 11 21 31 41 51
| | | | | |
1 SLYPSIMMAH NLCYTTLCNK ATVERLNLKI DEDYVITPNG DYFVTTKRRR GILPIILDEL 60
61 ISARKRAKKD LRDEKDPFKR DVLNGRQLAL KISANSVYGF TGATVGKLPC LAISSSVTAY 120
121 G
|
| Detection Method: | |
| Confidence: | 1532.218487 |
| Match: | 1tgoA_ |
| Description: | Exonuclease domain of family B (archaeal and phage) DNA polymerases; T4-like DNA polymerase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [590-610] |
1 11 21 31 41 51
| | | | | |
1 ATVIEPIRGY YDVPIATLDF N
|
|
Region B: Residues: [732-833] |
1 11 21 31 41 51
| | | | | |
1 RTMILKTKTA VQEKYCIKNG YKHDAVVVYG DTDSVMVKFG TTDLKEAMDL GTEAAKYVST 60
61 LFKHPINLEF EKAYFPYLLI NKKRYAGLFW TNPDKFDKLD QK
|
| Detection Method: | |
| Confidence: | 1532.218487 |
| Match: | 1tgoA_ |
| Description: | Exonuclease domain of family B (archaeal and phage) DNA polymerases; T4-like DNA polymerase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [834-1007] |
1 11 21 31 41 51
| | | | | |
1 GLASVRRDSC SLVSIVMNKV LKKILIERNV DGALAFVRET INDILHNRVD ISKLIISKTL 60
61 APNYTNPQPH AVLAERMKRR EGVGPNVGDR VDYVIIGGND KLYNRAEDPL FVLENNIQVD 120
121 SRYYLTNQLQ NPIISIVAPI IGDKQANGMF VVKSIKINTG SQKGGLMSFI KKVE
|
| Detection Method: | |
| Confidence: | 1532.218487 |
| Match: | 1tgoA_ |
| Description: | Exonuclease domain of family B (archaeal and phage) DNA polymerases; T4-like DNA polymerase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1008-1097] |
1 11 21 31 41 51
| | | | | |
1 ACKSCKGPLR KGEGPLCSNC LARSGELYIK ALYDVRDLEE KYSRLWTQCQ RCAGNLHSEV 60
61 LCSNKNCDIF YMRVKVKKEL QEKVEQLSKW
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
