| Protein: | UBX3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 455 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBX3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..455] | [1..455] |
|
|
7.0E-69 | [124..451] | [130..464] |
|
|
9.0E-67 | [124..451] | [144..478] |
|
|
9.0E-61 | [128..451] | [133..463] |
|
|
2.0E-58 | [141..455] | [101..427] |
|
|
1.0E-57 | [135..452] | [325..648] |
|
|
8.0E-57 | [129..453] | [129..462] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MDIFRHTFGN NDDSFIRIPG AFREEPPADL NGRTEDQNSN TNEPTQSRDG RLKSILHFLF 60
61 QAPLIVLYYL LNFIVRSSRL LKPLLRLHGF YQRKHNRLLD HSSQLHRLLE NLENEAQAVT 120
121 CSEG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.815 | a.7.8 | GAT domain |
| View | Download | 0.730 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.714 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.556 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.451 | d.195.1 | YopH tyrosine phosphatase N-terminal domain |
|
Region A: Residues: [125-288] |
1 11 21 31 41 51
| | | | | |
1 NGNNDDGSNT DSTSNNESSG VQFSFGSLYN PENGTFSKSI MQNSYTELLD ACSEQVKFGV 60
61 IYLHDPLLDN HMDYVNKILC SEAFVNMIRK YQVLLWYGDV TTSEGLQVSN ALKIRQYPLL 120
121 GIISLKAEKK IELIARVEGS ISNYKAQDLE AIFSKNYSRL IQLR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.664 | 0.646 | cytoplasm | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.627 | 0.109 | cytoplasm | c.1.10 | Aldolase |
| View | Download | 0.767 | 0.066 | cytoplasm | c.1.2 | Ribulose-phoshate binding barrel |
| View | Download | 0.553 | 0.016 | cytoplasm | c.23.4 | Succinyl-CoA synthetase domains |
| View | Download | 0.652 | 0.000 | cytoplasm | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.525 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.517 | N/A | N/A | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.508 | N/A | N/A | c.95.1 | Thiolase-like |
| View | Download | 0.501 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.471 | N/A | N/A | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.469 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.467 | N/A | N/A | c.51.3 | B12-dependend dehydatases associated subunit |
| View | Download | 0.451 | N/A | N/A | c.46.1 | Rhodanese/Cell cycle control phosphatase |
| View | Download | 0.438 | N/A | N/A | c.1.17 | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain |
| View | Download | 0.436 | N/A | N/A | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.416 | N/A | N/A | d.110.2 | GAF domain-like |
| View | Download | 0.410 | N/A | N/A | c.1.12 | Phosphoenolpyruvate/pyruvate domain |
| View | Download | 0.407 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.403 | N/A | N/A | c.53.1 | Resolvase-like |
| View | Download | 0.401 | N/A | N/A | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.401 | N/A | N/A | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.393 | N/A | N/A | c.61.1 | PRTase-like |
| View | Download | 0.387 | N/A | N/A | c.72.1 | Ribokinase-like |
| View | Download | 0.385 | N/A | N/A | d.211.1 | Ankyrin repeat |
| View | Download | 0.382 | N/A | N/A | c.26.2 | Adenine nucleotide alpha hydrolases-like |
| View | Download | 0.358 | N/A | N/A | c.10.1 | RNI-like |
| View | Download | 0.348 | N/A | N/A | c.61.1 | PRTase-like |
| View | Download | 0.347 | N/A | N/A | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
| View | Download | 0.333 | N/A | N/A | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.328 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.318 | N/A | N/A | c.1.8 | (Trans)glycosidases |
| View | Download | 0.317 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.310 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.303 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.302 | N/A | N/A | c.93.1 | Periplasmic binding protein-like I |
| View | Download | 0.291 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.283 | N/A | N/A | c.1.10 | Aldolase |
| View | Download | 0.281 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.280 | N/A | N/A | c.1.11 | Enolase C-terminal domain-like |
| View | Download | 0.267 | N/A | N/A | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.267 | N/A | N/A | c.26.3 | UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |
| View | Download | 0.265 | N/A | N/A | b.34.9 | Tudor/PWWP/MBT |
| View | Download | 0.264 | N/A | N/A | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.263 | N/A | N/A | c.51.2 | TolB, N-terminal domain |
| View | Download | 0.262 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.251 | N/A | N/A | c.66.1 | S-adenosyl-L-methionine-dependent methyltransferases |
| View | Download | 0.247 | N/A | N/A | c.1.8 | (Trans)glycosidases |
| View | Download | 0.240 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.238 | N/A | N/A | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.234 | N/A | N/A | c.53.1 | Resolvase-like |
| View | Download | 0.233 | N/A | N/A | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.230 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.229 | N/A | N/A | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.228 | N/A | N/A | c.49.1 | Pyruvate kinase, C-terminal domain |
| View | Download | 0.224 | N/A | N/A | d.153.1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
| View | Download | 0.223 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.222 | N/A | N/A | c.23.5 | Flavoproteins |
| View | Download | 0.220 | N/A | N/A | c.1.14 | RuBisCo, C-terminal domain |
| View | Download | 0.219 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.217 | N/A | N/A | d.75.2 | DNA repair protein MutS, domain I |
| View | Download | 0.216 | N/A | N/A | c.6.3 | PHP domain |
| View | Download | 0.213 | N/A | N/A | c.1.26 | Betaine-homocysteine S-methyltransferase |
| View | Download | 0.213 | N/A | N/A | c.111.1 | Activating enzymes of the ubiquitin-like proteins |
| View | Download | 0.210 | N/A | N/A | c.23.13 | Type II 3-dehydroquinate dehydratase |
| View | Download | 0.209 | N/A | N/A | c.62.1 | vWA-like |
| View | Download | 0.205 | N/A | N/A | c.23.13 | Type II 3-dehydroquinate dehydratase |
| Term | Confidence | Notes |
| antioxidant activity | 1.01389552298489 | bayes_pls_golite062009 |
| peroxidase activity | 0.753319016725885 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on peroxide as acceptor | 0.753319016725885 | bayes_pls_golite062009 |
| protein disulfide isomerase activity | 0.162300810242639 | bayes_pls_golite062009 |
| intramolecular oxidoreductase activity, transposing S-S bonds | 0.162300810242639 | bayes_pls_golite062009 |
| catalytic activity | 0.129588295266429 | bayes_pls_golite062009 |
| binding | 0.064243103392096 | bayes_pls_golite062009 |
| peroxiredoxin activity | 0.0343881005856616 | bayes_pls_golite062009 |
|
Region A: Residues: [289-356] |
1 11 21 31 41 51
| | | | | |
1 QQRQNIEMQR LIRQQQDSRY QDSLRRDQQR ESERLEQTQR EQMEREHQRI ENQWLLWRKS 60
61 QLKPEPSS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.705 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.630 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.554 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.669 | a.2.7 | tRNA-binding arm |
| View | Download | 0.559 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.548 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.543 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.527 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.519 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.512 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.503 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.486 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.473 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.447 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.447 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.447 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.446 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.443 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.432 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.417 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.417 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.417 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.413 | a.30.1 | ROP protein |
| View | Download | 0.401 | a.4.1 | Homeodomain-like |
| View | Download | 0.389 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.388 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.387 | a.2.7 | tRNA-binding arm |
| View | Download | 0.380 | a.2.7 | tRNA-binding arm |
| View | Download | 0.375 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.366 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.349 | a.4.12 | TrpR-like |
| View | Download | 0.348 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.342 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.339 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.333 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.327 | a.101.1 | Uteroglobin-like |
| View | Download | 0.326 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.325 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.325 | a.30.1 | ROP protein |
| View | Download | 0.321 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.317 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.315 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.313 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.313 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.311 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.309 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.306 | a.17.1 | p8-MTCP1 |
| View | Download | 0.294 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.293 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.293 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.289 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.275 | a.77.1 | DEATH domain |
| View | Download | 0.275 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.272 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.272 | a.24.4 | Hemerythrin |
| View | Download | 0.272 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.272 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.269 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.269 | a.46.1 | Methionine synthase domain |
| View | Download | 0.267 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.264 | a.2.7 | tRNA-binding arm |
| View | Download | 0.264 | c.47.1 | Thioredoxin-like |
| View | Download | 0.261 | a.2.7 | tRNA-binding arm |
| View | Download | 0.261 | a.30.1 | ROP protein |
| View | Download | 0.260 | a.77.1 | DEATH domain |
| View | Download | 0.260 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.256 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.255 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.254 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.253 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.253 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.253 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.252 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.249 | a.4.1 | Homeodomain-like |
| View | Download | 0.249 | d.68.7 | R3H domain |
| View | Download | 0.249 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.247 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.244 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.242 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.238 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.237 | a.30.1 | ROP protein |
| View | Download | 0.235 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.235 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.233 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.232 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.231 | a.2.3 | Chaperone J-domain |
| View | Download | 0.229 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.228 | a.2.7 | tRNA-binding arm |
| View | Download | 0.227 | a.2.7 | tRNA-binding arm |
| View | Download | 0.223 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.220 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.219 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.219 | a.65.1 | Annexin |
| View | Download | 0.219 | a.64.1 | Saposin |
| View | Download | 0.216 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.212 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.208 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.205 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.204 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.202 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
|
Region A: Residues: [357-455] |
1 11 21 31 41 51
| | | | | |
1 DKDASKVAIR LENGQRLVRK FDASLPTEEI YAFVELQLHD MLNSENDTLP VYQPANYQHQ 60
61 YSFKLITPVP RRELDLSTKI SDVSGIYPSG NIVMERLDE
|
| Detection Method: | |
| Confidence: | 10.09691 |
| Match: | 1h8cA_ |
| Description: | Fas-assosiated factor 1, Faf1 |
Matching Structure (courtesy of the PDB): |
|
