YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL085C-A
Organism:	Saccharomyces cerevisiae
Length:	68 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL085C-A.

Description	E-value	Query Range	Subject Range
gi\|49644553\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|49644553, gi\|... - gi\|50310789\|ref\|XP_455417.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644553\|emb\|CAG9812...	62.0	[0..1]	[67..1]
gi\|49528391 - gi\|49528391\|emb\|CAG62048.1\| unnamed protein product [Candida glabrata] gi\|50293333, gi\|... - gi\|50293333\|ref\|XP_449078.1\| unnamed protein product [Candida glabrata], gi\|49528391\|emb\|CAG62048.1\|...	58.0	[0..1]	[65..1]
gi\|45188136, gi\|... - gi\|45188136\|ref\|NP_984359.1\| ADR263Wp [Ashbya gossypii ATCC 10895], gi\|44982953\|gb\|AAS52183.1\| ADR26... gi\|44982953 - gi\|44982953\|gb\|AAS52183.1\| ADR263Wp [Ashbya gossypii ATCC 10895]	53.0	[0..1]	[68..1]
gi\|29835136 - gi\|29835136\|gb\|AAH51012.1\| Cdc2l1 protein [Mus musculus]	51.0	[0..1]	[50..1]
gi\|76646165 - gi\|76646165\|ref\|XP_604766.2\| PREDICTED: similar to MGC133508 protein [Bos taurus]	50.0	[0..1]	[60..168]
gi\|109468717 - gi\|109468717\|ref\|XP_578157.2\| PREDICTED: similar to Small EDRK-rich factor 2 (4F5rel) [Rattus norveg...	47.0	[0..4]	[57..272]
gi\|49654468, gi\|... - gi\|50420529\|ref\|XP_458801.1\| hypothetical protein DEHA0D08580g [Debaryomyces hansenii CBS767], gi\|49... gi\|49654468\|emb\|... - unnamed protein product [Debaryomyces hansenii CBS767]	46.0	[0..1]	[47..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGNQRDLA RQKNLKKQKD MAKNQKKSGD PKKRMESDAE ILRQKQAAAD ARREAEKLEK  60
   61 LKAEKTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.920819
Match:	PF04419.5
Description:	No description for PF04419.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits