YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YDL085C-A
Organism: Saccharomyces cerevisiae
Length: 68 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL085C-A.

Description E-value Query
Range
Subject
Range
gi|49644553|emb|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
gi|49644553, gi|... - gi|50310789|ref|XP_455417.1| unnamed protein product [Kluyveromyces lactis], gi|49644553|emb|CAG9812...
62.0 [0..1] [67..1]
gi|49528391 - gi|49528391|emb|CAG62048.1| unnamed protein product [Candida glabrata]
gi|50293333, gi|... - gi|50293333|ref|XP_449078.1| unnamed protein product [Candida glabrata], gi|49528391|emb|CAG62048.1|...
58.0 [0..1] [65..1]
gi|45188136, gi|... - gi|45188136|ref|NP_984359.1| ADR263Wp [Ashbya gossypii ATCC 10895], gi|44982953|gb|AAS52183.1| ADR26...
gi|44982953 - gi|44982953|gb|AAS52183.1| ADR263Wp [Ashbya gossypii ATCC 10895]
53.0 [0..1] [68..1]
gi|29835136 - gi|29835136|gb|AAH51012.1| Cdc2l1 protein [Mus musculus]
51.0 [0..1] [50..1]
gi|76646165 - gi|76646165|ref|XP_604766.2| PREDICTED: similar to MGC133508 protein [Bos taurus]
50.0 [0..1] [60..168]
gi|109468717 - gi|109468717|ref|XP_578157.2| PREDICTED: similar to Small EDRK-rich factor 2 (4F5rel) [Rattus norveg...
47.0 [0..4] [57..272]
gi|49654468, gi|... - gi|50420529|ref|XP_458801.1| hypothetical protein DEHA0D08580g [Debaryomyces hansenii CBS767], gi|49...
gi|49654468|emb|... - unnamed protein product [Debaryomyces hansenii CBS767]
46.0 [0..1] [47..1]

Back

Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGNQRDLA RQKNLKKQKD MAKNQKKSGD PKKRMESDAE ILRQKQAAAD ARREAEKLEK  60
   61 LKAEKTRR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 19.920819
Match: PF04419.5
Description: No description for PF04419.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.716 N/A N/A a.159.4 Description not found.
View Download 0.658 N/A N/A a.60.1 SAM/Pointed domain
View Download 0.587 N/A N/A a.118.1 ARM repeat
View Download 0.535 N/A N/A d.51.1 Eukaryotic type KH-domain (KH-domain type I)
View Download 0.491 N/A N/A c.47.1 Thioredoxin-like
View Download 0.491 N/A N/A c.47.1 Thioredoxin-like
View Download 0.470 N/A N/A a.144.1 PABC (PABP) domain
View Download 0.447 N/A N/A a.60.1 SAM/Pointed domain
View Download 0.390 N/A N/A a.48.3 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View Download 0.386 N/A N/A a.39.1 EF-hand
View Download 0.262 N/A N/A b.34.16 Description not found.
View Download 0.233 N/A N/A a.159.1 Protein serine/threonine phosphatase 2C, C-terminal domain
View Download 0.216 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.216 N/A N/A a.39.4 Hypothetical protein MTH865


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle