YRC Public Data Repository - Protein Structure Prediction

Protein:	UBC9
Organism:	Saccharomyces cerevisiae
Length:	157 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBC9.

Description	E-value	Query Range	Subject Range
gi\|187034543, gi... - gi\|39593702\|emb\|CAE61994.1\| Hypothetical protein CBG06002 [Caenorhabditis briggsae], gi\|187034543\|em... gi\|170589261, gi... - gi\|170589261\|ref\|XP_001899392.1\| ubiquitin-conjugating enzyme ubc-2 [Brugia malayi], gi\|158593605\|gb... gi\|209489351 - gi\|209489351\|gb\|ACI49123.1\| hypothetical protein Cbre_JD14.011 [Caenorhabditis brenneri] let-70 - ubiquitin-conjugating enzyme E2-17 KD status:Confirmed UniProt:P35129 protein_id:CAA92745.1 CRE12761, FL81_0... - RP40331 WBGene00062522 locus:Cre-let-70 status:Confirmed, null gi\|157755991 - gi\|157755991\|ref\|XP_001670339.1\| Hypothetical protein CBG06002 [Caenorhabditis briggsae AF16]	2.0E-56	[4..156]	[1..146]
gi\|109066782 - gi\|109066782\|ref\|XP_001096263.1\| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 4 (putative)... gi\|114613001, gi... - gi\|114613001\|ref\|XP_519070.2\| PREDICTED: ubiquitin-conjugating enzyme E2D 4 (putative) isoform 4 [Pa... UBE2D4 - ubiquitin-conjugating enzyme E2D 4 (putative)	3.0E-56	[4..156]	[1..146]
UBC28_ARATH - Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1	3.0E-55	[4..156]	[1..146]
UBC4_SOLLC - Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1 gi\|83283973 - gi\|83283973\|gb\|ABC01894.1\| ubiquitin-conjugating enzyme E2-like protein [Solanum tuberosum]	4.0E-55	[4..156]	[1..146]
gi\|456568 - gi\|456568\|gb\|AAA64427.1\| ubiquitin conjugating enzyme	4.0E-55	[4..156]	[1..146]
ubc4 - ubiquitin conjugating enzyme Ubc4 UBC4_SCHPO - Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc4 PE=...	5.0E-55	[4..156]	[1..146]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLCLQRLQ EERKKWRKDH PFGFYAKPVK KADGSMDLQK WEAGIPGKEG TNWAGGVYPI  60
   61 TVEYPNEYPS KPPKVKFPAG FYHPNVYPSG TICLSILNED QDWRPAITLK QIVLGVQDLL 120
  121 DSPNPNSPAQ EPAWRSFSRN KAEYDKKVLL QAKQYSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	534.626727
Match:	1a3s__
Description:	Ubiquitin conjugating enzyme, UBC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits