YRC Public Data Repository - Protein Structure Prediction

Protein:	ARP2
Organism:	Saccharomyces cerevisiae
Length:	391 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARP2.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[2..389]	[2..373]
ACT5_XENLA - Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1	0.0	[2..389]	[4..375]
ACT_PLAMG - Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1	0.0	[2..389]	[4..375]
gi\|80751139, gi\|... - gi\|80751139\|ref\|NP_001032193.1\| hypothetical protein LOC641320 [Danio rerio], gi\|78070743\|gb\|AAI0784... ACT4_ARTSX - Actin, clone 403 OS=Artemia sp. PE=2 SV=1	0.0	[2..389]	[4..375]
ACT2_ONCVO - Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1 gi\|158594157, gi... - gi\|170587336\|ref\|XP_001898433.1\| actin 2 [Brugia malayi], gi\|158594157\|gb\|EDP32745.1\| actin 2, putat...	0.0	[2..389]	[4..375]
ACTB_PONAB - Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 SV=1 ACTB_CANLF - Actin, cytoplasmic 1 OS=Canis lupus familiaris GN=ACTB PE=2 SV=3 ACTB_BOVIN - Actin, cytoplasmic 1 OS=Bos taurus GN=ACTB PE=1 SV=1 gi\|54695168 - gi\|54695168\|dbj\|BAD67166.1\| beta-actin [Meriones unguiculatus] gi\|149409094 - gi\|149409094\|ref\|XP_001512727.1\| PREDICTED: similar to tripartite motif-containing 37 protein [Ornit... ACTB_PONPY - Actin, cytoplasmic 1 - Pongo pygmaeus (Orangutan) gi\|55250205, gi\|... - gb\|AAH86153.1\| Unknown (protein for MGC:98584) [Xenopus laevis], gb\|AAH86219.1\| Unknown (protein fo... gi\|60686894 - gi\|60686894\|gb\|AAX35537.1\| beta-actin [Meleagris gallopavo] ACTB_MOUSE - Actin, cytoplasmic 1 OS=Mus musculus GN=Actb PE=1 SV=1 ACTB_MESAU - Actin, cytoplasmic 1 OS=Mesocricetus auratus GN=ACTB PE=1 SV=1 gi\|123980114, gi... - gi\|60655869\|gb\|AAX32498.1\| actin beta [synthetic construct], gi\|168277960\|dbj\|BAG10958.1\| actin, cyt... ACTB_SPECI - Actin, cytoplasmic 1 OS=Spermophilus citellus GN=ACTB PE=2 SV=1 ACTB_MACFA - Actin, cytoplasmic 1 OS=Macaca fascicularis GN=ACTB PE=2 SV=1 gi\|74316002 - gi\|74316002\|ref\|NP_001028256.1\| beta-actin [Macaca mulatta] ACTB_SHEEP - Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV=1 ACTB_CHICK - Actin, cytoplasmic 1 OS=Gallus gallus GN=ACTB PE=1 SV=1 ACTB_CHLAE - Actin, cytoplasmic 1 OS=Chlorocebus aethiops GN=ACTB PE=2 SV=1 ACTB_RAT - Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb PE=1 SV=1 ACTB_CAVPO - Actin, cytoplasmic 1 OS=Cavia porcellus GN=ACTB PE=2 SV=1 ENSCJAT00000000010 - null ACTB_HORSE - Actin, cytoplasmic 1 OS=Equus caballus GN=ACTB PE=2 SV=1 gi\|56342330\|dbj\|... - beta-actin [Pan troglodytes] tr\|G3GVD0\|G3GVD0... - Actin, cytoplasmic 1 OS=Cricetulus griseus GN=I79_001666 PE=3 SV=1 ACTB_TRIVU - Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=ACTB PE=2 SV=1 ACTB_PANTR - Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE=2 SV=1 ACTB - actin, beta ACTB_PIG - Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=1 SV=2 gi\|126338082, gi... - gi\|126338082\|ref\|XP_001362898.1\| PREDICTED: similar to beta actin isoform 1 [Monodelphis domestica],... gi\|542157396\|ref... - PREDICTED: actin, cytoplasmic 1 [Zonotrichia albicollis]	0.0	[2..389]	[3..374]
gi\|18565104 - gi\|18565104\|dbj\|BAB84579.1\| Actin 2 [Crassostrea gigas]	0.0	[2..389]	[4..375]
gi\|16554294 - gi\|16554294\|gb\|AAK27412.1\| actin [Monosiga brevicollis]	0.0	[2..389]	[3..374]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPHNPIVLD QGTGFVKIGR AGENFPDYTF PSIVGRPILR AEERASVATP LKDIMIGDEA  60
   61 SEVRSYLQIS YPMENGIIKN WTDMELLWDY AFFEQMKLPS TSNGKILLTE PPMNPLKNRE 120
  121 KMCEVMFEKY DFGGVYVAIQ

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [353-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFIGGAVLAS IMADKDHMWL SKQEWQESGP SAMTKFGPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2020.0
Match:	2btfA_
Description:	Actin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [141-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVLALYAQGL SSGVVVDSGD GVTHIVPVYE SVVLSHLTRR LDVAGRDVTR HLIDLLSRRG  60
   61 YAFNRTADFE TVRQIKEKLC YVSYDLDLDT KLARETTALV ESYELPDGRT IKVGQERFEA 120
  121 PECLFQPGLV DVEQPGVGEL LFNTVQSADV DIRSSLYKAI VLSGGSSMYP GLPSRLEKEL 180
  181 KQLWFSRVLH NDPSRLDKFK VRIEDPPRRK HM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2020.0
Match:	2btfA_
Description:	Actin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits