| Protein: | ABP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 592 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABP1.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-62 | [82..591] | [6158..6669] |
|
|
2.0E-55 | [1..592] | [1..592] |
|
|
5.0E-55 | [1..592] | [1..592] |
|
|
9.0E-54 | [98..591] | [1879..2402] |
|
|
5.0E-50 | [100..499] | [79..484] |
|
|
4.0E-46 | [6..592] | [3..531] |
|
Region A: Residues: [1-170] |
1 11 21 31 41 51
| | | | | |
1 MALEPIDYTT HSREIDAEYL KIVRGSDPDT TWLIISPNAK KEYEPESTGS SFHDFLQLFD 60
61 ETKVQYGLAR VSPPGSDVEK IIIIGWCPDS APLKTRASFA ANFAAVANNL FKGYHVQVTA 120
121 RDEDDLDENE LLMKISNAAG ARYSIQTSSK QQGKASTPPV KKSFTPSKSP
|
| Detection Method: |  |
| Confidence: | 677.30103 |
| Match: | 1hqz1_ |
| Description: | Cofilin-like domain of actin-binding protein abp1p |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 7.52071741004022 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 6.04859625643932 | bayes_pls_golite062009 |
| actin filament binding | 5.45532510538573 | bayes_pls_golite062009 |
| binding | 2.27089902377783 | bayes_pls_golite062009 |
| protein binding | 1.90274942416202 | bayes_pls_golite062009 |
| phosphatidylinositol-4,5-bisphosphate binding | 0.72248054722423 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.482954032096802 | bayes_pls_golite062009 |
| actin monomer binding | 0.224304003054399 | bayes_pls_golite062009 |
|
Region A: Residues: [171-444] |
1 11 21 31 41 51
| | | | | |
1 APVSKKEPVK TPSPAPAAKI SSRVNDNNDD DDWNEPELKE RDFDQAPLKP NQSSYKPIGK 60
61 IDLQKVIAEE KAKEDPRLVQ KPTAAGSKID PSSDIANLKN ESKLKRDSEF NSFLGTTKPP 120
121 SMTESSLKND DDKVIKGFRN EKSPAQLWAE RKAKQNSGNA ETKAEAPKPE VPEDEPEGEP 180
181 DVKDLKSKFE GLAASEKEEE EMENKFAPPP KKSEPTIISP KPFSKPQEPV KAEEAEQPKT 240
241 DYKKIGNPLP GMHIEADNEE EPEENDDDWD DDED
|
| Detection Method: | |
| Confidence: | 8.4 |
| Match: | 1ei3A |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [445-533] |
1 11 21 31 41 51
| | | | | |
1 EAAQPPLPSR NVASGAPVQK EEPEQEEIAP SLPSRNSIPA PKQEEAPEQA PEEEIEEEAE 60
61 EAAPQLPSRS SAAPPPPPRR ATPEKKPKE
|
| Detection Method: | |
| Confidence: | 13.76 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [534-592] |
1 11 21 31 41 51
| | | | | |
1 NPWATAEYDY DAAEDNELTF VENDKIINIE FVDDDWWLGE LEKDGSKGLF PSNYVSLGN
|
| Detection Method: | |
| Confidence: | 291.522879 |
| Match: | 1jo8A_ |
| Description: | Actin binding protein ABP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 4.94949685871786 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 4.41722924924158 | bayes_pls_golite062009 |
| actin filament binding | 3.69427077755816 | bayes_pls_golite062009 |
| binding | 2.49184519104882 | bayes_pls_golite062009 |
| protein binding | 2.10925438883926 | bayes_pls_golite062009 |
| structural constituent of muscle | 1.44117328570973 | bayes_pls_golite062009 |
| structural molecule activity | 0.423179340849406 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.371928447183203 | bayes_pls_golite062009 |
