| Protein: | HCM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 564 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HCM1.
| Description | E-value | Query Range |
Subject Range |
|
|
530.0 | [0..1] | [564..1] |
|
|
208.0 | [0..2] | [446..18] |
|
|
207.0 | [0..2] | [446..18] |
|
|
206.0 | [0..2] | [446..18] |
|
|
206.0 | [0..2] | [446..18] |
|
|
205.0 | [0..2] | [446..18] |
|
|
200.0 | [0..63] | [463..29] |
|
|
196.0 | [0..2] | [446..18] |
|
|
193.0 | [0..6] | [446..20] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MMNEDISIID GHNSFLTEKS TVLLTQAKRT LEDEKEMITP PSSTVRKTMK EVNKRPSHPL 60
61 SPDHSSPIAP SKAKRQRSDT CARSNGNLTL EEILQSLERR RI
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.539 | a.77.1 | DEATH domain |
| View | Download | 0.539 | a.77.1 | DEATH domain |
| View | Download | 0.535 | a.74.1 | Cyclin-like |
| View | Download | 0.535 | a.74.1 | Cyclin-like |
| View | Download | 0.518 | a.74.1 | Cyclin-like |
| View | Download | 0.518 | a.74.1 | Cyclin-like |
| View | Download | 0.513 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.509 | a.118.1 | ARM repeat |
| View | Download | 0.509 | a.118.1 | ARM repeat |
| View | Download | 0.492 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
|
Region A: Residues: [103-204] |
1 11 21 31 41 51
| | | | | |
1 NGELAKKPPY SYATLICLAI LQSQEGKLTL SQIYHWIHVH FPYYKQKDAS WQNSIRHNLS 60
61 LNDAFIKTEK SCDGKGHFWE VRPGAETKFF KGENRGYEFV KD
|
| Detection Method: | |
| Confidence: | 41.221849 |
| Match: | 1d5vA |
| Description: | Adipocyte-transcription factor FREAC-11 (s12, fkh-14) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [205-436] |
1 11 21 31 41 51
| | | | | |
1 SLQDIGKYFE IDSTLDELEQ VESGEGNDDL PDEEEREEAG KFPSIEIQLN SSPILRVSQL 60
61 HHIPQLKTDN SVLNPHENLE SMRNMIENDV NNIDSLEPPY VMKKYHTSLG LPSLVNAKDH 120
121 FQAGVKNNNI TQANRFNTLP ITSAKSPQNF RKYFTSFNSN FEDLSPLRSN VGAGSLLDPL 180
181 PYSPLKLYDQ KNLALMSKPQ SQQSYSNSQL PPPPSSHGSD LLKTPKMRHS DG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [437-564] |
1 11 21 31 41 51
| | | | | |
1 LEKTPSRLIS TPKDGNSILR KWQTPSHLFE DLYCSPLFRA IETPIRYITT PGGTLETQIS 60
61 PRKSSAPDVL TSATNSKFAS SGLFGVDVYS VWKRATEKIS DGNNTTDSNQ KHHPYHNHPS 120
121 NDSGNEKN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
