YRC Public Data Repository - Protein Structure Prediction

Protein:	CTR86
Organism:	Saccharomyces cerevisiae
Length:	563 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTR86.

Description	E-value	Query Range	Subject Range
CTR86 - Essential protein of unknown function; upstream region contains a Gcn4p responsive site suggesting a... CTR86_YEAST - Copper transport protein 86 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR86 PE=1 S... gi\|151943872 - gi\|151943872\|gb\|EDN62172.1\| copper transport protein [Saccharomyces cerevisiae YJM789]	0.0	[1..563]	[1..563]
ATXN10 - ataxin 10 gi\|123993129, gi... - gi\|124000121\|gb\|ABM87569.1\| ataxin 10 [synthetic construct], gi\|123993129\|gb\|ABM84166.1\| ataxin 10 [...	2.0E-41	[447..550]	[371..473]
ATX10_RAT - Ataxin-10 OS=Rattus norvegicus GN=Atxn10 PE=1 SV=1	4.0E-41	[447..550]	[371..473]
ATX10_MOUSE - Ataxin-10 OS=Mus musculus GN=Atxn10 PE=1 SV=2	4.0E-41	[447..550]	[371..473]
gi\|26451586, gi\|... - pir\|\|T01352 hypothetical protein F6N15.2 - Arabidopsis thaliana, gi\|3193319\|gb\|AAC19301.1\| contains...	4.0E-34	[450..545]	[377..473]
MU160_SCHPO - Meiotically up-regulated gene 160 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... mug160 - conserved eukaryotic protein	8.0E-33	[451..546]	[330..425]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-31	[466..550]	[1..84]
CG4975-PB, CG4975-PA - This gene is referred to in FlyBase by the symbol Dmel\CG4975 (CG4975, FBgn0034266). It is a protein...	5.0E-31	[447..531]	[257..341]

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Predicted Domain #1

Region A:
Residues: [1-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMNNFLDEF NLFDSIITMM KNDPCCVEDY EPIVENLNRI FQRTFNDEEH RKSMANSQLF  60
   61 WERLRDTLEA MLLPASLNEN SSIPYTRTVR GLILMMRNLA AENQEIPQKL LLQNLVIRGF 120
  121 LHATSEYVVD TPLIKHLYIA CLTCLFNIQQ NYSTVDMTTF PALLQFLQYP YGIKLEDGEE 180
  181 EEHFWLPYLF LFKTYLNNDE FSNEFFRDND TPQKDYYCVR DRIFFDIVTA KFIQDQENSF 240
  241 LIEKGRNYLD DSKLEITSID LSVLECISKS LTTASFGKYL NGLEERQPGK FTTLLQILQL 300
  301 VVTSKEDWNT YELTAIMSWC YPILQRLACK DIPAFFNKSC NDYAPSVAIQ LHSTLLSCLD 360
  361 IISDLCKFNH VRKFLISYDS VKILVSLLDT FQKNLLRINF LKGNGDTVNE IKITDHEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [419-563]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKIEDRLLIF NRVNTNESFI RADNFPHCKL VIIEILASLV YAHPEIQDQI RELGGLALIL  60
   61 SNCVIDDNDP FIKERSIVCL KFLLKNNAKN QEYVKKMEAQ DVVQDDALSK AGFEISVEKG 120
  121 GKVRLVSKEE DPGNENSEII SIDED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits