YRC Public Data Repository - Protein Structure Prediction

Protein:	BUD23
Organism:	Saccharomyces cerevisiae
Length:	275 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BUD23.

Description	E-value	Query Range	Subject Range
gi\|151943867 - gi\|151943867\|gb\|EDN62167.1\| bud site selection protein [Saccharomyces cerevisiae YJM789] BUD23_YEAST - 18S rRNA (guanine(1575)-N(7))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... gi\|190406476 - gi\|190406476\|gb\|EDV09743.1\| hypothetical protein SCRG_05444 [Saccharomyces cerevisiae RM11-1a] BUD23 - Methyltransferase, methylates residue G1575 of 18S rRNA; required for rRNA processing and nuclear ex...	9.0E-70	[1..275]	[1..275]
WBSCR22 - Williams Beuren syndrome chromosome region 22	1.0E-67	[3..275]	[7..281]
WBS22_MOUSE - Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Mus musculus GN=Wbscr22 PE=1 SV=1	5.0E-67	[3..275]	[7..281]
FBpp0302559, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG10903 (CG10903, FBgn0037543). It is a prote... gi\|220957392, gi... - gi\|220957392\|gb\|ACL91239.1\| CG10903-PA [synthetic construct], gi\|220948154\|gb\|ACL86620.1\| CG10903-PA...	2.0E-60	[3..275]	[4..276]
BUD23_SCHPO - 18S rRNA (guanine-N(7))-methyltransferase bud23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484... SPAC26A3.06 - methyltransferase	2.0E-59	[1..275]	[1..268]
CE01171 - Methyltransferase status:Confirmed UniProt:Q18257 protein_id:AAA81422.1	2.0E-58	[4..275]	[8..283]
gi\|20465285, gi\|... - gi\|8777361\|dbj\|BAA96951.1\| protein carboxyl methylase-like [Arabidopsis thaliana], gi\|20465285\|gb\|AA...	1.0E-54	[2..275]	[3..289]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPEELAPP EIFYNDSEAH KYTGSTRVQH IQAKMTLRAL ELLNLQPCSF ILDIGCGSGL  60
   61 SGEILTQEGD HVWCGLDISP SMLATGLSRE LEGDLMLQDM GTGIPFRAGS FDAAISISAI 120
  121 QWLCNADTSY NDPKQRLMRF FNTLYAALKK GGKFVAQFYP KNDDQVDDIL QSAKVAGFSG 180
  181 GLVVDDPESK KNKKYYLVLS SG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.741366
Match:	1d2gA_
Description:	Glycine N-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [203-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APPQGEEQVN LDGVTMDEEN VNLKKQLRQR LKGGKDKESA KSFILRKKEL MKRRGRKVAK  60
   61 DSKFTGRKRR HRF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits