| Protein: | RRT12 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 491 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRT12.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..491] | [1..491] |
|
|
0.0 | [3..422] | [27..452] |
|
|
0.0 | [2..434] | [27..469] |
|
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0.0 | [3..434] | [28..469] |
|
|
1.0E-99 | [4..428] | [22..450] |
|
|
2.0E-99 | [4..443] | [28..464] |
|
Region A: Residues: [1-105] |
1 11 21 31 41 51
| | | | | |
1 MKPQCILISL LVNLAYAEEY LVRFKNPTAF QQFTSNSNRS WRQFIDNKIE KKFSIGSFRG 60
61 VTMNLSKNLV NKLKKSPLVA DIVPNFRFEA FEGDSVNSAE SSYTF
|
| Detection Method: |  |
| Confidence: | 7.045757 |
| Match: | 1scjB_ |
| Description: | Subtilisin prosegment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [106-425] |
1 11 21 31 41 51
| | | | | |
1 NATAKYSYED VEEEQNITYQ PDAPRHLARI SRHYQLPFDV GDKDRYKSWF NYYYEHDYQG 60
61 QDVNAYIMDT GIFADHPEFE DRVIQGIDLT KEGFGDQNGH GTHVAGLVGS KTYGAAKRVN 120
121 LVEVKVLGKD GSGEASNVLS GLEFIVEHCT KVSRPQGKKC VANLSLGSFR SPIINMAVEG 180
181 AIEEGIVFVA AAGNFNLDAY WASPASAENV ITVGAFDDHI DTIAKFSNWG PCVNIFAPGV 240
241 EIESLSHLNY NDTLILSGTS MSTPIVTGVA AILLSKGIEP EMIAQEIEYL STRNVFHRRT 300
301 LFFKPSTPNQ ILYNGVDKLD
|
| Detection Method: | |
| Confidence: | 473.39794 |
| Match: | 1ic6A_ |
| Description: | Proteinase K |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.26156746825527 | bayes_pls_golite062009 |
|
Region A: Residues: [426-491] |
1 11 21 31 41 51
| | | | | |
1 DPYDDETFPR LNIEAIAKEL EEYNATLQTP MSENLQSGSK LWGWNNDVTL PLGEIRLKRR 60
61 DFMKNL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.486 | d.45.1 | ClpS-like |
| View | Download | 0.373 | a.4.1 | Homeodomain-like |
| View | Download | 0.575 | a.20.1 | PGBD-like |
| View | Download | 0.410 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.575 | a.20.1 | PGBD-like |
| View | Download | 0.486 | d.45.1 | ClpS-like |
| View | Download | 0.469 | a.159.2 | FF domain |
| View | Download | 0.469 | a.159.2 | FF domain |
| View | Download | 0.410 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.373 | a.4.1 | Homeodomain-like |
| View | Download | 0.355 | a.39.1 | EF-hand |
| View | Download | 0.329 | d.58.17 | Metal-binding domain |
| View | Download | 0.311 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.274 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.265 | a.112.1 | Description not found. |
| View | Download | 0.257 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.249 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.238 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.236 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.232 | a.4.1 | Homeodomain-like |
| View | Download | 0.229 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.227 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.227 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.226 | a.64.1 | Saposin |
| View | Download | 0.224 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.223 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.222 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.218 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.218 | a.30.1 | ROP protein |
| View | Download | 0.213 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.212 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.207 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.207 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.205 | d.45.1 | ClpS-like |
| View | Download | 0.205 | a.4.10 | N-terminal Zn binding domain of HIV integrase |
| View | Download | 0.205 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.202 | a.112.1 | Description not found. |
| View | Download | 0.202 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
