YRC Public Data Repository - Protein Structure Prediction

Protein:	YCR007C
Organism:	Saccharomyces cerevisiae
Length:	239 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCR007C.

Description	E-value	Query Range	Subject Range
YCR007C - Putative integral membrane protein, member of DUP240 gene family; YCR007C is not an essential gene gi\|207347339 - gi\|207347339\|gb\|EDZ73540.1\| YCR007Cp-like protein [Saccharomyces cerevisiae AWRI1631] YCP7_YEAST - DUP240 protein YCR007C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR007C PE=1 SV=1 gi\|151943827 - gi\|151943827\|gb\|EDN62127.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190406442 - gi\|190406442\|gb\|EDV09709.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	2.0E-87	[1..239]	[1..239]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPHLDNNSN NDDVKLDTLG EQNVLSSAEN ITLPEDTFKS YMTYLLYEMA HYKPMIFSFL  60
   61 ALSVSILIVV IFHNVKACDV VFGFSIFVTS ILFLSTLIPF NVYISDEGFR IKLLLEVITH 120
  121 RPAVKGKEWR AITDNMNQYL LDNGLWSTRY YFYSSERCYK FFRFLVKEKP PGVNVNSSVK 180
  181 DATSTQIDAP ANEASNEVIK CFSFSSDPIF EAYFVKAVEV EKQAQQEYWR KQYPDADIP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.744727
Match:	PF00674
Description:	DUP family

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits