YRC Public Data Repository - Protein Structure Prediction

Protein:	YCR007C
Organism:	Saccharomyces cerevisiae
Length:	239 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCR007C.

Description	E-value	Query Range	Subject Range
YCR007C - Putative integral membrane protein, member of DUP240 gene family; YCR007C is not an essential gene gi\|207347339 - gi\|207347339\|gb\|EDZ73540.1\| YCR007Cp-like protein [Saccharomyces cerevisiae AWRI1631] YCP7_YEAST - DUP240 protein YCR007C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR007C PE=1 SV=1 gi\|151943827 - gi\|151943827\|gb\|EDN62127.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190406442 - gi\|190406442\|gb\|EDV09709.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	2.0E-87	[1..239]	[1..239]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPHLDNNSN NDDVKLDTLG EQNVLSSAEN ITLPEDTFKS YMTYLLYEMA HYKPMIFSFL  60
   61 ALSVSILIVV IFHNVKACDV VFGFSIFVTS ILFLSTLIPF NVYISDEGFR IKLLLEVITH 120
  121 RPAVKGKEWR AITDNMNQYL LDNGLWSTRY YFYSSERCYK FFRFLVKEKP PGVNVNSSVK 180
  181 DATSTQIDAP ANEASNEVIK CFSFSSDPIF EAYFVKAVEV EKQAQQEYWR KQYPDADIP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.744727
Match:	PF00674
Description:	DUP family

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits