YRC Public Data Repository - Protein Structure Prediction

Protein:	YCL068C
Organism:	Saccharomyces cerevisiae
Length:	260 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCL068C.

Description	E-value	Query Range	Subject Range
BUD5_YEAST - Bud site selection protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD5 PE=1 S... BUD5 - GTP/GDP exchange factor for Rsr1p (Bud1p) required for both axial and bipolar budding patterns; muta... gi\|151943859 - gi\|151943859\|gb\|EDN62159.1\| GTP/GDP exchange factor for Rsr1 protein [Saccharomyces cerevisiae YJM78...	0.0	[1..260]	[35..294]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-97	[71..260]	[1..190]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVLIDNVLA YLLEQDDLFV TARFAIQGQI VSRRVNKIHI SNITDVLLQQ FISHTLPYND  60
   61 NIVPKKILDS MRTAVRQLLE ATACVSRECP LVKRSQDIKR ARKRLLSDWY RLGADANMDA 120
  121 VLLVVNSAWR FLAVWRPFVN SIQHATQELY QNIAHYLLHG NVNIQRVTAL LQLVMGQDDL 180
  181 LFSMDDVLQE VFRIQLYLNK MLPHNSHKWQ KPSPFDSANL LLNFRDWTTD NALLQELLLS 240
  241 YPTINKNKHK NHSVPRLIQV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits