| Protein: | VAC17 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 423 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAC17.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..423] | [1..423] |
|
|
2.0E-97 | [229..423] | [1..195] |
|
|
0.01 | [8..97] | [294..371] |
|
Region A: Residues: [1-148] |
1 11 21 31 41 51
| | | | | |
1 MATQALEDIT ERLLIRSQEA ILQLDLWIQR QQRSSICQTT DQESLDKLSQ QYNQYMSQLN 60
61 SLYVRSESVR DKLSKEQQRR LITEDNEHQR IEDLVREFQD ITLRLNELAT VPNEAPNDSP 120
121 QSQSTRSSLG SFQPRPLKII ERQRLCMV
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.923 | 0.872 | vacuolar membrane | a.47.2 | t-snare proteins |
| View | Download | 0.871 | 0.004 | vacuole inheritance | a.7.7 | BAG domain |
| View | Download | 0.900 | 0.001 | receptor activity | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.898 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.838 | N/A | N/A | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.820 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.780 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.762 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.755 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.729 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.729 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.713 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.702 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.679 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.651 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.621 | N/A | N/A | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.595 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.578 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.570 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.568 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.553 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.550 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.528 | N/A | N/A | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.526 | N/A | N/A | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.515 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.505 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.494 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.493 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.480 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.478 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.473 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.467 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.457 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.443 | N/A | N/A | a.47.1 | STAT |
| View | Download | 0.413 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.402 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.401 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.396 | N/A | N/A | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.389 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.385 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.384 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.380 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.379 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.375 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.373 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.360 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.360 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.355 | N/A | N/A | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.354 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.350 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.349 | N/A | N/A | f.25.1 | Cytochrome c oxidase subunit III-like |
| View | Download | 0.344 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.336 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.332 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.327 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.327 | N/A | N/A | c.43.1 | CoA-dependent acyltransferases |
| View | Download | 0.313 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.302 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.300 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.286 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.285 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.283 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.278 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.269 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.265 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.265 | N/A | N/A | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.265 | N/A | N/A | c.92.2 | "Helical backbone" metal receptor |
| View | Download | 0.264 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.255 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.251 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.249 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.248 | N/A | N/A | f.25.1 | Cytochrome c oxidase subunit III-like |
| View | Download | 0.245 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.244 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.239 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.229 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.226 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.218 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.215 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.210 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.207 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.207 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.203 | N/A | N/A | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.202 | N/A | N/A | a.48.2 | Transferrin receptor ectodomain, C-terminal domain |
| View | Download | 0.202 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
|
Region A: Residues: [149-206] |
1 11 21 31 41 51
| | | | | |
1 TPSKPPKKSV GFNPINEVDC PSKTNSLPCS PKKQPARNRT LRAAKSHDTG LNKSKKPS
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.228 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.244 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.252 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
|
Region A: Residues: [207-423] |
1 11 21 31 41 51
| | | | | |
1 SSDTYESFFK NRQRLSLTFF DEMDDEDFDS DQDTIILPNI STPPHVGVTA KGAEFEPLRR 60
61 YNSHESILSN KPAPSKSLNL GSFSASFFRP SNPTFGTSIS NVQVNCHPTV AATMAPSRNG 120
121 PRISSSKALL SSFIARSDTH TVKENNTNLK HASFMDKFNS SLSTISESFQ SKRGRKNKGM 180
181 NEERISNHNV AQEQKNNMDI SVSIEELQDA LNTELLF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
