YRC Public Data Repository - Protein Structure Prediction

Protein:	GRX1
Organism:	Saccharomyces cerevisiae
Length:	110 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRX1.

Description	E-value	Query Range	Subject Range
gi\|2724050, gi\|2... - gi\|2724056\|gb\|AAB92658.1\| glutaredoxin type I [Fritillaria agrestis], gi\|2724054\|gb\|AAB92657.1\| glut...	2.0E-30	[6..109]	[2..101]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-29	[6..109]	[2..101]
GRXC2_ARATH - Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1	2.0E-29	[6..109]	[2..101]
gi\|116310771, gi... - gi\|125548975\|gb\|EAY94797.1\| hypothetical protein OsI_16580 [Oryza sativa Indica Group], gi\|116310771... GRXC6_ORYSA, GLR... - Glutaredoxin-C6 (Glutaredoxin-C2 homolog 1) - Oryza sativa (Rice), (P55142) Glutaredoxin GRXC6_ORYSJ - Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2	3.0E-29	[6..109]	[2..101]
GLRX_RICCO - Glutaredoxin OS=Ricinus communis PE=3 SV=1	5.0E-29	[6..109]	[2..101]
gi\|65811 - pir\|\|GDPG glutaredoxin - pig GLRX1_PIG - Glutaredoxin-1 OS=Sus scrofa GN=GLRX PE=1 SV=2	1.0E-27	[8..109]	[4..104]
gi\|643695 - gi\|643695\|dbj\|BAA04769.1\| glutaredoxin [Homo sapiens]	1.0E-27	[8..109]	[4..104]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSQETIKHV KDLIAENEIF VASKTYCPYC HAALNTLFEK LKVPRSKVLV LQLNDMKEGA  60
   61 DIQAALYEIN GQRTVPNIYI NGKHIGGNDD LQELRETGEL EELLEPILAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.522879
Match:	1jhb__
Description:	Glutaredoxin (Grx, thioltransferase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits