| Protein: | RRP7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 297 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP7.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..297] | [1..297] |
|
|
1.0E-72 | [1..178] | [1..178] |
|
|
3.0E-61 | [34..296] | [22..254] |
|
|
2.0E-60 | [1..149] | [1..149] |
|
|
1.0E-23 | [167..296] | [182..342] |
|
Region A: Residues: [1-152] |
1 11 21 31 41 51
| | | | | |
1 MGIEDISAMK NGFIVVPFKL PDHKALPKSQ EASLHFMFAK RHQSSNSNES DCLFLVNLPL 60
61 LSNIEHMKKF VGQLCGKYDT VSHVEELLYN DEFGLHEVDL SALTSDLMSS TDVNEKRYTP 120
121 RNTALLKFVD AASINNCWNA LKKYSNLHAK HP
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.417 | 0.044 | nucleolus | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.413 | 0.011 | nucleolus | c.23.4 | Succinyl-CoA synthetase domains |
| View | Download | 0.405 | 0.011 | nucleolus | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.550 | 0.010 | nucleolus | a.63.1 | Apolipophorin-III |
| View | Download | 0.394 | 0.007 | nucleolus | a.7.4 | Smac/diablo |
| View | Download | 0.394 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.392 | N/A | N/A | f.1.5 | Exotoxin A, middle domain |
| View | Download | 0.363 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.352 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.333 | N/A | N/A | c.53.2 | beta-carbonic anhydrase, cab |
| View | Download | 0.333 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.330 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.325 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.317 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.304 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.299 | N/A | N/A | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.299 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.289 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.288 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.278 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.264 | N/A | N/A | c.26.3 | UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |
| View | Download | 0.264 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.249 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.245 | N/A | N/A | a.116.1 | GTPase activation domain, GAP |
| View | Download | 0.244 | N/A | N/A | a.116.1 | GTPase activation domain, GAP |
| View | Download | 0.238 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.237 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.236 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.233 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.228 | N/A | N/A | a.116.1 | GTPase activation domain, GAP |
| View | Download | 0.226 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.225 | N/A | N/A | d.79.1 | YjgF-like |
| View | Download | 0.215 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| Term | Confidence | Notes |
| RNA binding | 5.63242063989137 | bayes_pls_golite062009 |
| mRNA binding | 3.87784929382714 | bayes_pls_golite062009 |
| nucleic acid binding | 3.55052626921306 | bayes_pls_golite062009 |
| binding | 3.3324591601331 | bayes_pls_golite062009 |
| 3.14079080441249 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 1.9439583927206 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.58538594745054 | bayes_pls_golite062009 |
| structural molecule activity | 1.30816853575581 | bayes_pls_golite062009 |
| protein binding | 1.26544376923141 | bayes_pls_golite062009 |
| transcription regulator activity | 1.10029555513317 | bayes_pls_golite062009 |
| DNA binding | 0.984725930713243 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.762984801550668 | bayes_pls_golite062009 |
| snoRNA binding | 0.749770142991192 | bayes_pls_golite062009 |
| transcription factor activity | 0.255891228964936 | bayes_pls_golite062009 |
| ligase activity | 0.189138561929496 | bayes_pls_golite062009 |
| snRNA binding | 0.168885334268568 | bayes_pls_golite062009 |
|
Region A: Residues: [153-297] |
1 11 21 31 41 51
| | | | | |
1 NELFEWTYTT PSFTTFVNFY KPLDIDYLKE DIHTHMAIFE QREAQAQEDV QSSIVDEDGF 60
61 TLVVGKNTKS LNSIRKKILN KNPLSKHENK AKPISNIDKK AKKDFYRFQV RERKKQEINQ 120
121 LLSKFKEDQE RIKVMKAKRK FNPYT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.903 | 0.421 | nucleolus | a.25.1 | Ferritin-like |
| View | Download | 0.691 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.397 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.351 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.344 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.312 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.281 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.279 | N/A | N/A | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.277 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.273 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.267 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.239 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.231 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.216 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.215 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.211 | N/A | N/A | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.210 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.204 | N/A | N/A | a.2.5 | Prefoldin |
