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View Structure Prediction Details

Protein: BIK1
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIK1.

Description E-value Query
Range		 Subject
Range
BIK1 - Microtubule-associated protein, component of the interface between microtubules and kinetochore, inv...
gi|190406417 - gi|190406417|gb|EDV09684.1| nuclear fusion protein BIK1 [Saccharomyces cerevisiae RM11-1a]
BIK1_YEAST - Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIK1 PE=1 SV...
 3.0E-42 [1..440] [1..440]
MYH6 - myosin, heavy chain 6, cardiac muscle, alpha
 3.0E-33 [29..367] [1554..1938]
gi|3668187 - gi|3668187|dbj|BAA33452.1| myosin heavy chain [Theragra chalcogramma]
 3.0E-33 [58..415] [843..1249]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 4.0E-33 [29..366] [1557..1940]
MYH1B_CHICK - Myosin-1B OS=Gallus gallus GN=MYH1B PE=2 SV=3
 4.0E-33 [29..366] [1557..1940]
MYH2_PIG - Myosin-2 OS=Sus scrofa GN=MYH2 PE=2 SV=1
gi|55741490 - ref|NP_999301.1| myosin heavy chain 2a [Sus scrofa]
 6.0E-33 [29..366] [1556..1939]

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Predicted Domain #1
Region A:
Residues: [1-60] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRYQRKIGC FIQIPNLGRG QLKYVGPVDT KAGMFAGVDL LANIGKNDGS FMGKKYFQTE  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.67837
Match: 1lplA_
Description: Cytoskeleton-associated protein F53F4.3
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [61-440] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPQSGLFIQL QKVASLIEKA SISQTSRRTT MEPLSIPKNR SIVRLTNQFS PMDDPKSPTP  60
   61 MRSFRITSRH SGNQQSMDQE ASDHHQQQEF GYDNREDRME VDSILSSDRK ANHNTTSDWK 120
  121 PDNGHMNDLN SSEVTIELRE AQLTIEKLQR KQLHYKRLLD DQRMVLEEVQ PTFDRYEATI 180
  181 QEREKEIDHL KQQLELERRQ QAKQKQFFDA ENEQLLAVVS QLHEEIKENE ERNLSHNQPT 240
  241 GANEDVELLK KQLEQLRNIE DQFELHKTKW AKEREQLKMH NDSLSKEYQN LSKELFLTKP 300
  301 QDSSSEEVAS LTKKLEEANE KIKQLEQAQA QTAVESLPIF DPPAPVDTTA GRQQWCEHCD 360
  361 TMGHNTAECP HHNPDNQQFF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle