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View Structure Prediction Details

Protein: YCL001W-A
Organism: Saccharomyces cerevisiae
Length: 153 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCL001W-A.

Description E-value Query
Range		 Subject
Range
PELO - pelota homolog (Drosophila)
gi|123989284, gi... - gi|123999236|gb|ABM87197.1| pelota homolog (Drosophila) [synthetic construct], gi|123989284|gb|ABM83...
 1.0E-48 [4..152] [26..195]
gi|220955770, gi... - gi|220955770|gb|ACL90428.1| pelo-PA [synthetic construct], gi|220946020|gb|ACL85553.1| CG3959-PA [sy...
pelo-PA - The gene pelota is referred to in FlyBase by the symbol Dmel\pelo (CG3959, FBgn0011207). It is a pro...
 3.0E-48 [4..152] [26..195]
gi|14276152, gi|... - gi|19527274|ref|NP_598819.1| pelota homolog [Mus musculus], gi|14276154|gb|AAK58117.1|AF148639_1 PEL...
 5.0E-48 [4..152] [26..195]
gi|11762247 - gi|11762247|gb|AAG40400.1|AF325048_1 AT4g27650 [Arabidopsis thaliana]
 2.0E-43 [4..152] [26..195]
erf1 - translation release factor eRF1
DOM34_SCHPO - Protein dom34 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dom34 PE=1 SV=1
 1.0E-42 [4..150] [26..193]
PELO_PYRHO - Protein pelota homolog OS=Pyrococcus horikoshii GN=pelA PE=3 SV=1
PELO_PYRHO - Protein pelota homolog OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 10...
 1.0E-39 [4..151] [23..191]
PELO_PYRAB - Protein pelota homolog OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pelA PE=3 SV=1
PELO_PYRAB - Protein pelota homolog OS=Pyrococcus abyssi GN=pelA PE=3 SV=1
 9.0E-39 [4..151] [23..191]
PELO_PYRFU - Protein pelota homolog OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pel...
PELO_PYRFU - Protein pelota homolog OS=Pyrococcus furiosus GN=pelA PE=3 SV=1
 3.0E-38 [4..150] [23..190]

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Predicted Domain #1
Region A:
Residues: [1-153] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFLQFINNN RQEGQGYISE KLFKTKKNEM IRKTVTNLVA VRLKNLSHEF DVIENYLRYI  60
   61 ASTSEHLFTA IKRHFNKCAR KLLKEAIDSK SNSETATVVL QEGFSGICLL KASSIILKLK 120
  121 LKFPKKKDRT DISKLCDKKE RMTQWLEISI LMN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.07
Match: 1dt9A
Description: Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1; C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1; N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural molecule activity 0.659710385123639 bayes_pls_golite062009
structural constituent of ribosome 0.438550557227505 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle