| Protein: | REI1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 393 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REI1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [5..289] | [191..486] |
|
|
0.0 | [2..318] | [417..739] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MSSSGVYTCN SCVLTFDSSD EQRAHMKSDW HRYNLKRRVA QLPPISFETF DSKVSAAAAS 60
61 TSKSAEKEKP VTKKELKRRE KQALLEKKKK LLEI
|
| Detection Method: |  |
| Confidence: | 23.69897 |
| Match: | 1meyG_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [95-290] |
1 11 21 31 41 51
| | | | | |
1 ARANMLENMQ KSQEGNTPDL SKLSLQENEE NKEKEEPKKE EPEQLTEEEM AERVMQENVR 60
61 NRVDIPLEQC LFCEHNKHFK DVEENLEHMF RTHGFYIPEQ KYLVDKIGLV KYMSEKIGLG 120
121 NICIVCNYQG RTLTAVRQHM LAKRHCKIPY ESEDERLEIS EFYDFTSSYA NFNSNTTPDN 180
181 EDDWEDVGSD EAGSDD
|
| Detection Method: | |
| Confidence: | 16.522879 |
| Match: | 1tf6A_ |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.22788923931596 | bayes_pls_golite062009 |
| RNA binding | 1.74380511533595 | bayes_pls_golite062009 |
| protein binding | 1.40325872764913 | bayes_pls_golite062009 |
| nucleic acid binding | 1.34680997308743 | bayes_pls_golite062009 |
| DNA binding | 1.1931409893677 | bayes_pls_golite062009 |
| transcription regulator activity | 0.956307663356759 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.61308065188272 | bayes_pls_golite062009 |
| transcription factor activity | 0.136882694830461 | bayes_pls_golite062009 |
| chromatin binding | 0.0298489654874197 | bayes_pls_golite062009 |
|
Region A: Residues: [291-393] |
1 11 21 31 41 51
| | | | | |
1 EDLPQEYLYN DGIELHLPTG IKVGHRSLQR YYKQDLKPEV ILTEGQGTLV AAETRSFLPA 60
61 FDKKGVQTQQ RVWQTERFDK KRLDKRSAKF VNNQPHYRDQ LLQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.633 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.424 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.328 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.633 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.424 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.328 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.305 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.305 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.295 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.295 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.290 | a.21.1 | HMG-box |
| View | Download | 0.265 | d.58.49 | YajQ-like |
| View | Download | 0.246 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.233 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.220 | a.4.1 | Homeodomain-like |
| View | Download | 0.206 | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.205 | d.110.4 | SNARE-like |
| View | Download | 0.204 | a.20.1 | PGBD-like |
